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A few things I’ve learned while writing a thesis

By: Amanda Holdman, MS student, Geospatial Ecology and Marine Megafauna Lab & Oregon State Research Collective for Applied Acoustics, MMI

“Never use the passive where you can use the active.” I recently received this comment in a draft of my thesis. While this pertained to a particular edit, it has since become my motto for writing in general – to stay active in writing. I knew before beginning this process, from my peers, that it takes time to write a thesis or dissertation, and usually much longer than anticipated, resulting in late caffeinated hours. My roommates have recently moved out, making it a perfect opportunity to convert my home into a great evening office. I needed fewer distractions so I unplugged the TV and set up a desk with ideal conditions for writing. I’m in a race against time with my defense set for only a month away, and getting into good writing habits has helped me smooth out a lot of the writing stress, so I figured I could share those tips.

  1. Write sooner

The writing process can be daunting due to its size and importance. In the beginning I tended to wait until I thought I had researched enough about the topic. But, I have now learned not to wait until all the data is in and the results are clear to start writing. Some researchers might argue that results are needed before one can put the proper spin on the introduction, but spin isn’t quite needed for a first draft.  Most of the writing can be actually be done before all the data have arrived. For example, I didn’t need to know the results of my observations before writing the manuscript about them; the rationale for having done the research doesn’t change with the results, so a draft of the introduction can be written without knowing the results. The methodology also doesn’t depend on the results, nor does the analysis that will be performed on the data, so a good framework for the results section can be written before all of the statistical tests are run. And before I know it, I have almost a full draft, just with quite a few gaps.

  1. Write Continually

Productivity begets productivity, so don’t stop writing. It keeps my mind working and my project moving. I try to write a little every day or set a goal word limit. (500 words a day is easily obtainable and you feel proud at the end of the day). Writing as frequently as possible for me has helped to reveal gaps in my knowledge or understanding. Vague and disoriented writing tends to reflect a vague and disorganized thought, leading me to dig through the literature for more clarity.

  1. Figure out how you write and edit

Some people are better writers when they first put their thoughts on paper and plan to go back and fix awkward sentences, poor word choices, or illogical sentences later. My perfection has always plagued me, so I always edit as a write, with one goal only: to make sure I’ve expressed the idea in my head clearly on the page. I don’t move on until the sentence (or thought) makes sense with no ambiguity in the meaning. Clarity of thought is always the aim in writing a manuscript, yet it is very difficult to come back to a section of writing days or weeks later and sort out a mess of thought if I don’t clarify my writing while the thought is still fresh in your head. This means I am constantly re-reading and revising what I’ve written, but also hopefully means that when I submit something to my advisor or committee it only needs simple revisions, thereby saving time by getting as “close to right” as I could the first time around.

 

 

 

  1. Develop a routine

It’s important to learn when and what makes us productive. For me, writing in several short bursts is more efficient than writing in a few, long extended periods. When I try to write for long hours, I notice my concentration diminishing around the hour mark, so I try to take frequent 15 minute breaks. For me, the most productive parts of the day are the beginning the end. It’s important to build momentum early, and have a routine for ending the day too. At the end of each day, I always leave myself something easy to get started with the next day, so I wake up knowing exactly where I am going to start.

  1. Find a template

Usually, when we decide on a date and deadlines for the final draft of our thesis due, we’re so frantic and pressed for time trying to get all the content, that we forget about the time it takes to make a draft pretty. My last HUGE time-saving tip is to find a colleague who has recently turned in their thesis or dissertation and still has their final word document. You can save time by reusing their document as a template for margins, page number position and other formatting guidelines. Everything you’ve written can easily be pasted into a formatted template.

  1. Keep your motivation near

Finally, always try to keep the end result in mind. Whether it be holding a beautifully bound version of your thesis or a first author publication, keeping motivated is important. Publishing is not a requirement for completing a thesis but it is an ultimate goal for me. I know I owe it to myself, the people who I have worked with along the way, those who have supported me in some way (e.g., my committee), and to the funders that have helped pay for the research. Plus, to have a competitive edge in the next job I apply for, and to get the most leverage possible from my masters training, it is important for me to finish strong with a publication or two. Visualizing the end result helps me to take action to finish my thesis and advance my career.

Now, I think it’s about time to stop writing about writing a thesis and get back to actually writing my thesis.

 

Understanding How Nature Works

By: Erin Pickett, MS student, Oregon State University

They were climbing on their hands and knees along a high, narrow ridge that was in places only two inches wide. The path, if you could call it that, was layered with sand and loose stones that shifted whenever touched. Down to the left was a steep cliff encrusted with ice that glinted when the sun broke down through the thick clouds. The view to the right, with a 1,000ft drop, wasn’t much better.

–The Invention of Nature by Andrea Wulf

This is a description of Alexander von Humboldt and the two men that accompanied him when attempting to summit Chimborazo, which in 1802 was believed to be the highest mountain in the world. The trio was thwarted about 1,000 ft from the top of the peak by an impassable crevice but set a record for the highest any European had ever climbed. This was a scientific expedition. With them the men brought handfuls of scientific instruments and Humboldt identified and recorded every plant and animal species along the way. Humboldt was an explorer, a naturalist, and an observer of everything. He possessed a memory that allowed him to recount details of nature that he had observed on a mountain in Asia, and find patterns and connections between that mountain and another in South America. His perspective of nature as being interconnected, and theories as to why and how this was so, led to him being called the father of Ecology. In less grandeur terms, Humboldt was a biodiversity explainer.

Humboldt sketched detailed images like this one of Chimborazo, which allowed him to map vegetation and climate zones and identify how these and other patterns and processes were related. Source: http://www.mappingthenation.com/blog/alexander-von-humboldt-master-of-infographics/

In a recent guest post on Carbon Brief, University of Connecticut Professor Mark Urban summarized one of his latest publications in the journal Science, and called on scientists to progress from biodiversity explainers to biodiversity forecasters.  Today, as global biodiversity is threatened by climate change, one of our greatest scientific problems has become accurately forecasting the responses of species and ecosystems to climate change. Earlier this month, Urban and his colleagues published a review paper in Science titled “Improving the forecast for biodiversity under climate change”. Many of our current models aimed at predicting species responses to climate change, the authors noted, are missing crucial data that hamper the accuracy and thus the predictive capabilities of these models. What does this mean exactly?

Say we are interested in determining whether current protected areas will continue to benefit the species that exist inside their boundaries over the next century. To do this, we gather basic information about these species: what habitat do they live in, and where will this habitat be located in 100 years? We tally up the number of species currently inhabiting these protected areas, figure out the number of species that will relocate as their preferred habitat shifts (e.g. poleward, or higher in elevation) and then we subtract those species from our count of those who currently exist within the boundaries of this protected area. Voilà, we can now predict that we will lose up to 20% of the species within these protected areas over the next 100 years*.  Now we report our findings to the land managers and environmental groups tasked with conserving these species and we conclude that these protected areas will not be sufficient and they must do more to protect these species. Simple right? It never is.

This predication, like many others, was based on a correlation between these species ranges and climate. So what are we missing? In their review, Urban et al. outline six key factors that are commonly left out of predictive models, and these are: species interactions, dispersal, demography, physiology, evolution and environment (specifically, environment at appropriate spatiotemporal scales) (Figure 1). In fact, they found that more than 75% of models aimed at predicting biological responses to climate change left out these important biological mechanisms. Since my master’s project is centered on species interactions, I will now provide you with a little more information about why this specific mechanism is important, and what we might have overlooked by not including species interactions in the protected area example above.

Figure 1: Six critical biological mechanisms missing from current biodiversity forecasts. Source: Urban et al. 2016
Figure 1: Six critical biological mechanisms missing from current biodiversity forecasts. Source: Urban et al. 2016

I study Adelie and gentoo penguins, two congeneric penguin species whose breeding ranges overlap in a few locations along the Western Antarctic Peninsula. You can read more about my research in previous blog posts like this one. Similar to many other species around the world, both of these penguins are experiencing poleward range shifts due to atmospheric warming. The range of the gentoo penguin is expanding farther south than ever before, while the number of Adelie penguins in these areas is declining rapidly (Figure 2). A correlative model might predict that Adelie penguin populations will continue to decline due to rising temperatures, while gentoo populations will increase. This model doesn’t exactly inform us of the underlying mechanisms behind what we are observing. Are these trends due to habitat shifts? Declines in key prey species? Interspecific competition? If Adelie populations are declining due to increased competition with other krill predators (e.g. gentoo penguins), then any modelling we do to predict future Adelie population trends will certainly need to include this aspect of species interaction.

Figure 2. A subset of the overall range of Adelie and gentoo penguins and their population trends at my study site at Palmer Station 1975-2014. Source: https://www.allaboutbirds.org/on-the-antarctic-peninsula-scientists-witness-a-penguin-revolution/
Figure 2. A subset of the overall range of Adelie and gentoo penguins and their population trends at my study site at Palmer Station 1975-2014. Source: https://www.allaboutbirds.org/on-the-antarctic-peninsula-scientists-witness-a-penguin-revolution/

Range expansion can result in novel or altered species interactions, which ultimately can affect entire ecosystems. Our prediction above that 20% of species within protected areas will be lost due to habitat shifts does not take species interactions into account. While some species may move out of these areas, others may move in. These new species may potentially outcompete those who remain, resulting in a net loss of species larger than originally predicted. Urban et al. outline the type of data needed to improve the accuracy of predictive models. They openly recognize the difficulties of such a task but liken it to the successful, collective effort of climate scientists over the past four decades to improve the predictive capabilities of climate forecasts.

As a passionate naturalist and philosopher, there is no doubt Humboldt would agree with Urban et al.’s conclusion that “ultimately, understanding how nature works will provide innumerable benefits for long-term sustainability and human well-being”. I encourage you to read the review article yourself if you’re interested in more details on Urban et al.’s views of a ‘practical way forward’ in the field of biodiversity forecasting. For a historical and perhaps more romantic account of the study of biodiversity, check out Andrea Wulf’s biography of Alexander von Humboldt, called The Invention of Nature.

 *This is an oversimplified example based off of a study on biodiversity and climate change in U.S. National parks (Burns et al. 2003)

References:

Burns, C. E., Johnston, K. M., & Schmitz, O. J. (2003). Global climate change and mammalian species diversity in US national parks. Proceedings of the National Academy of Sciences, 100(20), 11474-11477.

Urban, M. 14 September 2016. Carbon Brief. Guest post: How data is key to conserving wildlife in a challenging environment. From: https://www.carbonbrief.org/guest-post-data-key-conserving-wildlife-changing-climate (Accessed: 22 September 2016)

Urban, M. C., Bocedi, G., Hendry, A. P., Mihoub, J. B., Pe’er, G., Singer, A., … & Gonzalez, A. (2016). Improving the forecast for biodiversity under climate change. Science, 353(6304), aad8466.

Wulf, A. (2015). The Invention of Nature: Alexander Von Humboldt’s New World. Knopf Publishing Group.

Cetaceans in the news

By Florence Sullivan, MSc Student Oregon State University, Department of Fisheries and Wildlife

It’s been a couple long, busy weeks here at the GEMM lab as my field season has wrapped up and new labmates are just getting started. There are students in the lab at all hours organizing, processing, and analyzing data. Much of our work investigating the spatial and temporal patterns of marine mammals around the globe takes long hours of parsing through information to bring you results. Systematic sampling is an important research tool but, sometimes, exciting discoveries just wash up at your front door.

Humpback Whale stranding in Puget Sound

http://westseattleblog.com/2016/08/stranded-whale-reported-south-of-fauntleroy-ferry-dock/

Just recently on August 7, 2016, a 39 foot, juvenile female Humpback whale stranded at the Fauntleroy Ferry Terminal in West Seattle, WA. This is very close to my home town, and a recent GEMM lab intern was in the area at the time, so we have a photo of this event for you!  The humpback came ashore while still alive, but despite efforts to keep it comfortable and wet, the whale died before the tide returned.

Humpback whale stranded at Fauntleroy Ferry Terminal, West Seattle. photo credit: Sarah Wiesner
Humpback whale stranded at Fauntleroy Ferry Terminal, West Seattle. photo credit: Sarah Wiesner

A cursory necropsy, conducted on site by researchers from NOAA fisheries and the Cascadia Research Collective, showed the animal had multiple internal parasites and injuries associated with beaching, as well as being in poor nutritional condition overall. There were also bites on the lower jaw consistent with killer whale encounters, and a pod of orca had been spotted in the area the previous day. Necropsies are an important source of data about the basic physiology and biology of marine mammals that is not accessible through any other means. The carcass was towed to a deep-water disposal site approved by federal and state agencies and sunk.  Humpback whale sightings in the Salish Sea have increased in the last five years. This, together with the fact that this juvenile was in poor nutritional condition, could indicate that there is competition for resources.

New Species Discovered!

There have been two new species of cetaceans discovered in recent months!

http://news.nationalgeographic.com/2016/07/new-whale-species/

http://www.npr.org/sections/thetwo-way/2016/07/27/487665728/mysterious-and-known-as-the-raven-scientists-identify-new-whale-species

The first exciting announcement was published in the journal Marine Mammal Science in July. Japanese fishermen in the North Pacific have long reported a small, black beaked whale they call karasu, “raven.” In 2013, Japanese researchers published a paper about this black, beaked whale variant of the sub-family Berardiinae using three stranded carcasses, but the sample size was too small to make any conclusions. Three years later there is strong genetic evidence that this is a new species of beaked whale based on (1) genetic analysis of samples from a stranded animal on St. George, Alaska (2) skeletons in a high school in Unalaska, Alaska, (3) skeletons in the Smithsonian archives, and (4) skeletons in other museum and institutional collections around the Pacific Rim. The species still needs to be described and named, but some researchers have suggested Berardius beringiae to honor the sea where it was found. What do you think?

This beaked whale stranded in the Aleutian Islands in 2004, and was measured by Reid Brewer of the University of Alaska Southeast.  Analysis of tissue samples later identified the whale as one of the new species. Photo Credit: Don Graves

http://www.smithsonianmag.com/smithsonian-institution/new-species-ancient-river-dolphin-discovered-exctinct-millions-years-ago-180960146/

The second announcement of a new species came from the Smithsonian Institution earlier this month. A skull of the newly-named Arktocara yakataga species was found more than 60 years ago near the present day city of Yakutat, Alaska. Obviously belonging to a prehistoric dolphin, the skull was kept at the Smithsonian’s National Museum of Natural History until new research found that it was actually a previously undiscovered species. A. yakatoga is thought to be a relative of the present day South Asian River Dolphin, and is both the northernmost, and one of the oldest dolphin fossils found to date. This new find is a reminder to everyone that not all discoveries are made in the field. Museum and archival collections continue to play an important role in the advancement of science and knowledge. Check out the link above to see some awesome artistic renderings of the new species, as well as a 3D scan of the skull in question.

Humpbacks vs Orcas

http://onlinelibrary.wiley.com/doi/10.1111/mms.12343/full

http://news.nationalgeographic.com/2016/08/humpback-whales-save-animals-killer-whales-explained/

Sounds like the next big B-Sci-fi movie doesn’t it? Well, this story is the latest to go viral on the internet. Published on July 20, 216 in the journal Marine Mammal Science, the study investigated accounts of humpback whales interfering with killer whale attacks. Researchers looked at 115 interactions between the two species. Humpbacks initiated 57% of the interactions, and 87% of these moments occurred when the killer whales were attacking or feeding on prey.  Surprisingly, only 11% of the prey in these events were humpback whales, while the remaining 89% ranged from other cetaceans to pinnipeds, to a sunfish! The authors suggest that the humpback whales were alerted to attacking killer whales in the area by vocalizations, and that this attracts them to the scene regardless of the species being attacked. Although kin selection (care for or defense of relatives to preserve your family’s genetics even though the action may be detrimental to self), or reciprocity (exchange between individuals for mutual benefit) might explain some of this behavior, the fact that humpback whales so often defended other species means that we cannot rule out the possibility of altruistic behavior.  This is a pretty fascinating read, and definitely opens up some new questions for researchers!

Humpback whales.
Humpback whales. Photo credit: Florence Sullivan

Olympians in Rio: keep your mouths closed! But what are the resident marine animals to do?

By Leila Lemos, Ph.D. Student, Department of Fisheries and Wildlife, OSU

August 5th was the Olympic games opening date in Rio de Janeiro, Brazil, the city where I am from. The opening ceremony was a big success and everybody seems to be enjoying the sporting events and all of the news that the city is offering. However, behind all the colors, magic and joy of this big event, Brazilians are very unsatisfied about hosting an event like this while the whole country is simultaneously dealing with a big educational, health, political and economic crisis at the moment.

Unfortunately, the crisis also affects the environment and is consequently affecting athletes that are competing in our “carioca” waters. Guanabara Bay, more specifically, where the sailing competitions are taking place, receive waters from more than 50 rivers and streams, as displayed below.

Figure 1: Hydrographic map of the Guanabara Bay region, Rio de Janeiro, Brazil, showing rivers and streams (in blue) that feed into the Bay.
Figure 1: Hydrographic map of the Guanabara Bay region, Rio de Janeiro, Brazil, showing rivers and streams (in blue) that feed into the Bay.

 

Much of the water is not treated and brings sewage and garbage from upstream (Fig.2). Although the government reports that the pollution index in the Bay conforms to national and international standards, and that the areas where competitions are taking place are clean and present no risk to athlete health, public health experts advise athletes to keep their mouth closed whenever they are in contact with the water, as reported by the Independent newspaper (http://www.independent.co.uk/sport/olympics/2016-rio-olympics-water-feces-athletes -mouth-shut-brazil-a7163021.html). The goal was to clean up 80% of the Bay in time for the Olympic games, however this goal was far from achieved and the “solution” was to install barriers to try to avoid waste and untreated sewage reaching the event area.

Figure 2: Pollution contrasting with the beauty of the Sugar Loaf, one of the main tourist attractions in the city. The photo shows the area where competitions are taking place. Source: http://www.insidethegames.biz/articles/1027142/brazilian-politician-accused-of-undermining-effort-to-clean-guanabara-bay-by-publicity-seeking-jump-into-water
Figure 2: Pollution contrasting with the beauty of the Sugar Loaf, one of the main tourist attractions in the city. The photo shows the area where competitions are taking place.
Source: http://www.insidethegames.biz/articles/1027142/brazilian-politician-accused-of-undermining-effort-to-clean-guanabara-bay-by-publicity-seeking-jump-into-water.

 

Bacteria, fecal coliforms and metals occur in the Bay. Professionals from Oswaldo Cruz Foundation (Fiocruz), one of the world’s main public health research institutions, found a drug-resistant bacterium in the Bay waters, which is resistant to antibiotics and may cause multiple infections (https://www.rt.com/news/214807-brazil-olympic-venue-superbug/). Metals like mercury, one of the most toxic metals, can also be found in the Bay and shows long-term effects on marine life of the ecosystem.

Guanabara Bay used to be part of the migratory route of Southern right whales (Eubalaena australis), but unfortunately we do not see the whales in the area anymore. We also do not see turtles any longer and populations of prawns are extremely reduced. On the other hand, mussels, biological indicators of ambient pollution due to their sessile and filter-feeding habits, are continuously proliferating in the Bay. These individuals can accumulate high pollutant levels and are not safe to eat when present in polluted areas. However, local fishermen persist in eating mussels and fish from the Bay.

The Guiana dolphin (Sotalia guianensis) is the only mammal that still frequents the Bay waters and, while about 400 Guiana dolphins inhabited the region in the 80s, currently there are only 34 individuals (http://www.abc.net.au/news/2016-06-27/rio27s-dolphins-need-olympic-effort-to-survive-toxic-waters/7543544). The project MAQUA, responsible for monitoring the dolphins in the Guanabara Bay, correlated the decline of the population with worsening water quality, fishing and noise, as published in an article in “O Globo”, the main Brazilian newspaper (http://oglobo.globo.com/rio/populacao-de-golfinhos-da-baia-de-guanabara-sofre-reducao-de-90-em-tres-decadas-1-16110633).
In this article they presented pictures of dolphins from the Guiana dolphin population in the Bay, including the unfortunate consequences on human interactions (Fig.3).

Figure 3: Guiana dolphins in Guanabara Bay, Rio de Janeiro. A: some of the remaining individuals of Guiana dolphin population from the Guanabara Bay; B: a dolphin plays with a plastic bag; C: a dolphin that suffered an accident with a nylon yarn when young presents a scar across its whole circumference; D: a dolphin exhibit the absence of the pectoral fin. Source: O Globo, 2015 (http://oglobo.globo.com/rio/populacao-de-golfinhos-da-baia-de-guanabara-sofre-reducao-de-90-em-tres-decadas-1-16110633).
Figure 3: Guiana dolphins in Guanabara Bay, Rio de Janeiro. A: some of the remaining individuals of Guiana dolphin population from the Guanabara Bay; B: a dolphin plays with a plastic bag; C: a dolphin that suffered an accident with a nylon yarn when young presents a scar across its whole circumference; D: a dolphin exhibit the absence of the pectoral fin.
Source: O Globo, 2015 (http://oglobo.globo.com/rio/populacao-de-golfinhos-da-baia-de-guanabara-sofre-reducao-de-90-em-tres-decadas-1-16110633).

 

This dolphin population is living in heavily polluted waters caused solely by human behavior. Although dolphins may distinguish between trash and food, they feed on contaminated fish – a consequence of bioaccumulation.

During my master’s degree at the Oswaldo Cruz Foundation in Rio de Janeiro, I undertook a toxicological analysis of different species of dolphins (Lemos et al. 2013; http://www.sciencedirect.com/science/article/pii/S0147651313003370). We found high levels of different metals, such as mercury and cadmium, in animals along the north coast of Rio de Janeiro. Just like the mussels, dolphins bioaccumulate high pollutant levels in their tissues and organs, primarily via feeding, but also through dermal contact. Metals and other pollutants present in polluted waters, like the Guanabara Bay, enter the food chain and affect multiple trophic levels, compromising health.

Dolphins from the Guanabara Bay are feeding on the same prey as the local fisherman, and act as sentinels of the environment, warning of public health concerns for humans. Just like humans, these dolphins are long-lived and large mammals, but they live every day in these waters and must open their mouths to survive. If we are concerned about human athletes spending a few hours in the water, we should be outraged at the conditions we force marine animals to live in daily in the Rio de Janeiro region. The dolphins have the intrinsic right to live in a non-polluted environment and be healthy.

Recapping and Reflecting on the International Marine Conservation Conference!

By: Amanda Holdman, MS student, Geospatial Ecology and Marine Megafauna Lab & Oregon State Research Collective for Applied Acoustics, MMI

The GEMM Lab recently returned from the 4th International Marine Conservation Congress (IMMC4) in St. John’s, Newfoundland, Canada, and it was a whirlwind of activity to say the least. The flights were long and the morning coffee was scarce, but the setting was beautiful and plenty of scientific fun was had! The IMCC conferences are the largest international academic conferences on marine conservation and the theme of this year’s conference was to “Make Science Matter”, or in my interpretation “to use conservation science to drive policy change and implementation”. Over five days we were exposed to a flood of new ideas, hypothesis, methods/techniques, analyses and findings – even presenting our own!

Leigh, Florence, and I were all slated to give a talk on the opening day of presentations. Leigh presented on her new method for analyzing animal movement data in space and time, Florence on the effects of vessel activities on gray whales, and myself on the habitat use of harbor porpoise off of the Oregon Coast.

The conference was filled with non-stop talks, lunch sessions that incorporated workshops, student activities with plenary speakers, and an evening activity planned for every night. Short breaks during the conference shenanigans allowed for some exploring of the St. John’s area including Signal Hill, Cape Spear, and the George Street Festival. Highlights included humpback mom and calf, fin whales (my first time seeing them), dozens of seabirds I wish I could identify and some popular Canadian music.

IMG_0204View from Signal Hill, where the first transatlantic wireless signal was received in 1901.

IMG_0224 The Arkells playing at the George St. Festival.

IMG_0244 Light house at Cape Spear – the Eastern most point of North America!

The conference was an awesome place to learn, meet and network with new friends, and catch up with some familiar faces. For Florence and I, our research fit perfectly into the theme of the IMCC conference. Being able to translate results of our work into relevant actions that can lead to improved marine conservation was an amazing feeling. Entering the academic sphere for the first time can be daunting, but the IMCC community was friendly, open and dedicated. Having others outside of our OSU family take an interest in our research truly shows that all of our hard work has paid off. We received great feedback and even some suggestions we could incorporate into our manuscript submissions! Definitely not something to be taken for granted!

On a more personal note, my talk, “The spatio-temporal distribution and ecological drivers of harbor porpoise off of the Oregon coast” seemed to be well received, I was honored to be awarded runner up for best student presentation by the conference!

IMG_0257

I would not have received this award if it was not for Leigh, my committee members, OSU, and my lab mates. I couldn’t have been more proud of our lab and the feedback that we received at IMCC.

But now, the stress is over, the audience is gone, I’m still riding my high but I’ve found a moment of quietness on the plane ride home to analyze myself. I’ve been to a few regional conferences, and have been lucky enough to attend two large international conferences. However, now that I am nearing the end of graduate school (23 months down, 4 to go), it thus seems like a sensible time to reflect on how to make the most of these trips and experiences.

Apart from managing our research projects and scientific writing in graduate school, we are faced with the big challenge of presenting our research to a range of audiences. Oral presentations are one of the most important ways in which we communicate scientific results to other scientists and to be honest, NOTHING paralyses me more than having to present my work – or so I thought.

I am no stranger to sweaty palms and a racing heart. Whether it’s 5 people, 50 people, or 500 people – public speaking has always been a gut wrenching experience for me. When it comes to presentations, my flight response is in full swing, and the only thing that keeps me from running away from the presentation is that I would be more embarrassed fleeing than just giving the presentation.

However, gradual exposure and better practice over the past couple of years has helped me get over my fear of public speaking. I can’t say that I never get nervous when I have to speak in front of other people, but now my fear is controllable. Now, when I feel myself starting to get anxious I remember that while these feelings are very much real, they do not mean that I cannot give a good talk. The trick for me was learning to be separate from my anxiety by acknowledging it and allowing myself to have that feeling, and then deciding that even with that feeling I can move forward. It took quite a bit of practice for me not to be overwhelmed by these feelings of anxiety – but I’m happy to report that presenting in large groups DOES get easier with practice!

So for me, speaking at IMCC granted me with a sense of confidence, perhaps even a career-changing affirmative opportunity. Scouting out your audience or the room you speak in advance, writing your talk well before the delivery date, and practicing it numerous times reduces an enormous amount of pre-presentation jitters.  I’ve learned how to manage the jitters in order to give a good presentation. In fact, I think public speaking can even be fun in addition to being a great way to spread your message!

Doing a masters (Or PhD) means you constantly challenge yourself and improve your skills. As I continue to encounter new situations and tackle new challenges, I expect that I will go through more cycles of lag and growth as I did with public speaking. I hope that I will have the perspective and patience to appreciate the lag times as integral parts of my development. The IMCC conference was only a snapshot of a major high, but it was an important milestone of my scientific career and personal journey.

Here’s a few more pictures from the beautiful St. Johns! IMG_0253Jelly bean row!

IMG_0193Eating lunch and overlooking the harbor at Signal Hill.

IMG_0273Boat houses at Quidi Vidi Harbour.

 

Papahānaumokuākea: soon to be the world’s largest marine protected area?

By Erin Pickett, MS student, Oregon State University

On January 29, 2016, a group of native Hawaiian community leaders and conservation practitioners wrote a letter of request to President Barack Obama asking him to expand Papahānaumokuākea Marine National Monument1

Papahānaumokuākea is a UNESCO World Heritage Site and at the time of its creation in 2006, it became the world’s largest fully protected marine area2. The monument encompasses 140,000 square miles and surrounds the Northwestern Hawaiian Island (NWHI) chain, which extends about 2000 km northwest from the main Hawaiian Islands to Kure atoll (see map below). This monument was originally created through use of the Antiquity Act of 1906, which grants the President of the United States the authority to protect valuable public land through the establishment of a national monument3. The initial letter of request sent to President Obama in January called on the President to use his executive power to expand Papahānaumokuākea marine national monument.

This letter of request was put simply. The letter writers believed that as an island boy himself, President Barack Obama understands the importance of the ocean to the people of Hawai’i, especially future generations. This letter and the discussions that have since followed it, emphasize not only the biological value of conserving this large swath of marine habitat, but also the cultural significance of preserving such a place. In the field of marine biology we don’t traditionally think of marine protected areas (MPAs) as “…cultural seascapes that have meaning and significance in the formation and perpetuation of oceanic identity4,” however in the case of the expansion of Papahānaumokuākea, cultural justification is aptly interwoven with biological conservation. The proposed expansion of this marine protected area is especially significant to me for this reason.

While I am not native Hawaiian, much of my life is tied to the ocean. My personal life and my current career as a master’s student of marine science are driven by aloha and malama ‘āina. These two concepts are core tenets of Hawaiian culture and they describe a profound love (aloha) and deep respect and sense of caring (malama) for the āina, or land. I have never felt more aloha or such a strong sense of caring for a place than for Papahānaumokuākea.

Papahānaumokuākea is a sacred place; a place where the Hawaiian people believe life began. Today, the islands, atolls and the surrounding ocean within the monument continue to create and sustain vast quantities of life, in the form of marine species. The use of the monument is limited to cultural, scientific and educational activities, while activities such as commercial fishing and deep-sea mining are prohibited4,5. One primary benefit of large MPAs is that they improve the state of an ecosystem by supporting sufficient numbers of large and far-ranging predators6. The waters surrounding the NWHI support high numbers of large fish, sharks, marine mammals and seabirds. A total of 7,000 known species exist here, 25% of which are endemic7. The expansion of this monument would mean greater protection for these species, and for important pelagic habitats such as seamounts. Underwater seamounts are biodiversity hot spots and a vast number of them exist outside of the current boundaries but within the limits of the proposed expansion of the monument. Far ranging top predators such as seabirds would benefit greatly from an expanded protected area that would reduce the chance of interactions with longline fishing vessels. The foraging ranges of many of the 14 million seabirds that exist in the monument extend beyond its current boundaries4,8. The Hawaiian longline fishery is especially dangerous for Laysan and black-footed albatross, and hooks an estimated 1,000-2,000 of each species per year9.

The Laysan albatross, or mōlī, as it is known in Hawaiian, is the species that captured my attention the most during my time in Papahānaumokuākea. In 2010, I worked for the NOAA/NMFS Hawaiian monk seal research program on Laysan Island. While our work on Laysan was focused on the Hawaiian monk seal, it was hard to miss the energy of the presence of the mōlī. We had the opportunity to observe these birds come to the island to make nests, lay eggs and raise their chicks. The incessant sound of hundreds of thousands of albatross whistling and clicking their beaks at their mates and with their chicks is one I will never forget. You can hear these sounds for yourself in a video that Rachael included in a previous blog post about her time on Midway atoll. On Laysan, I had the opportunity to connect deeply with a natural place and this connection reinforced the feeling of aloha ‘aina.

While in the NWHI, we occupied much of our daily life with not only observing and connecting with the wildlife, but also with carrying out conservation activities, such as monitoring the local monk seal population and removing marine debris from beaches. While Laysan is remote, it has not escaped the far reaches of marine plastic pollution (see Rachael’s blog for more on this). Additionally, many of the NWHI are in a perpetual state of restoration and invasive species removal projects. After Laysan, I spent time working on Lisianski Island and then Kure atoll, where we worked tirelessly to eradicate an invasive weed, Verbesina encelioides, and replace it with native plants that we had cultivated. Throughout all of these activities, there was always a feeling that it was our duty to malama ‘aina, to care for and protect these fragile islands and the species that depend on them.

A significant amount of momentum has been gained since January, with one important development being a formal proposal that outlines the main points of this request to the President. These include a request to expand the perimeter of the monument to the limits of the U.S. exclusive economic zone, which lies an additional 150 nm beyond its current boundaries. This expansion would more than quadruple the monument’s current size and make it the world’s largest contiguously protected area. The Obama administration has sent delegates to Hawaii to learn more and has intentions to develop an official federal proposal10. While the timeline of this is unclear, a local coalition of community leaders are actively garnering public support to encourage the Obama administration to sign this expansion into law.

There was a meeting held last night on Kauai to hear public input regarding the proposed expansion of Papahānaumokuākea and because I was not able to attend I was inspired to write this blog to share my thoughts about why I believe further protection of this monument is a pono (moral, just, righteous) decision. The place-based connection I have with Hawai’i and its surrounding waters are what have guided my career in the fields of marine science and conservation. For me, this connection is with Hawai’i, but for you it may your own hometown, island, backyard or nearby mountain peak.

Our love of these places is significant because it facilitates a greater understanding of why they are important to protect. In the field of conservation today, it is especially critical that we foster these types of connections. Preserving wild places, whether they be remote island ecosystems or more easily accessible nature parks, is one way we can ensure that more people have the opportunity to make these connections.

 

References

1 Eagle, N. (2016). Honolulu Civil Beat. Hawaiians Press Obama to Expand NW Islands Marine Monument. Retrieved from http://www.civilbeat.org/2016/02/should-obama-expand-papahanaumokuakea/

2 Pew Charitable Trust. Global Ocean Legacy-Hawaii (2016). Fact sheet.Papahānaumokuākea Marine National Monument: Expanding protections to conserve Hawaiian culture and biodiversity Retrieved from: http://www.pewtrusts.org/en/research-and-analysis/fact-sheets/2016/05/papahanaumokuakea-marine-national-monument

3 “Antiquities Act” Wikipedia: The Free Encyclopedia. Wikimedia Foundation, Inc. 4 March 2016. Web. 2 August 2016.

4 Kerr, J., et al. 2016. PUʻUHONUA: A PLACE OF SANCTUARY. The Cultural and Biological Significance of the proposed expansion for the Papahānaumokuākea Marine National Monument.

5 Papahānaumokuākea Marine National Monument: Resource Protection. Retrieved from: http://www.papahanaumokuakea.gov/resource/

6 Edgar, Graham J., et al. “Global conservation outcomes depend on marine protected areas with five key features.” Nature 506.7487 (2014): 216-220.

7 National Marine Sanctuaries (2016), National Oceanic and Atmospheric Administration. Accessed on 01 February 2016: http://sanctuaries.noaa.gov/#PM

8 Papahanaumokuakea Marine National Monument Management Plan 2008; KE Keller, AD Anders, SA Shaffer, MA Kappes, B Flint, and A Friedlander, 2009. Seabirds: A Marine Biogeographic Assessment of the Northwestern Hawaiian Islands.

9 Cousins, K.L., et al. Managing pelagic longline-albatross interactions in the North Pacific Ocean. Retrieved from: http://www.wpcouncil.org/documents/managebird.pdf

10 Eagle, N. (2016). Hawaii Lawmakers To Obama: Don’t Grow Marine Monument. Honolulu Civil Beat. Retrieved from: http://www.civilbeat.org/2016/05/hawaii-lawmakers-to-obama-dont-grow-marine-monument/

 

Sunny south meets windy west

By Lauren Ashley, senior at Savannah State University and current summer intern in the GEMM Lab

Enjoying South Beach, Oregon. Photo by Katherine Bartels
Enjoying South Beach, Oregon. Photo by Katherine Bartels

My name is Lauren Ashley and I am a rising senior from Savannah State University. I am a marine science major, with dreams of becoming a veterinarian. I would have never thought I would experience a summer on the northwest coast. And let me tell you guys, it is a huge adjustment!

I secured an internship with the Living Marine Resources Cooperative Science Center (LMRCSC). I am working in the GEMM Lab at Oregon State University where I am developing an interactive display for the visitor center at the Hatfield Marine Science Center. This display will convey the results from our LMRCSC funded project about the impacts of environmental and climate change on California sea lions and their prey.

I am processing and creating the interactive maps for display through the software ArcGIS 10.3. The amount of challenges I have run into coincide with the amount of things I have learned about the software. The biggest tool I have in my arsenal for problem solving is patience. Somedays, some of the biggest challenges I face, when processing information, seem to have the most simple of solutions, as unconventional and out of the box as they may be. For example, I needed to add a raster depicting the California sea lions forecasted distribution but the files seemed to be incorrect. I went in the conventional way, several times I may add, trying to correct the data. Nothing seemed to work. Eventually my research mentor showed me that the problem could be solve simply by copying the raw data and pasting it to a blank excel file. In a course of a single day the maps can transform based on feedback and edits. And boy does that take time and thought. I am fortunate to be the intern of such a proficient GIS user. Most of what I have learned so far has come at the grace of her teachings.

As I learn to communicate science to a broad audience, most of which have no science background, I have discovered that people learn and process information in many different ways. The biggest challenge thus far is finding a balance where the map conveys information that is not too overwhelming or too broad that it takes away from the true learning outcome. We don’t want to confuse or bore our audience. The outcome of this display is to inform our audience of how environmental change influences the distribution of not just one species at a time, but a community of species through predator and prey interactions.

The very first map that I made for this project, putting it nicely, was terrible. The map, displayed below, had no labeling besides the title whatsoever. The legend was non-existent so even though I knew what the data was no one else knew. And, even though the green shapes of the Pacific northwest were obvious to me, I was told that many viewers would not know that they we looking at Oregon, Washington and Vancouver Island. As time has passed, the maps I produce have developed quite a bit, though I still have many chafes and challenges ahead of me. It is certainly becoming clear to me that effective science communication is a tricky goal.

My first attempt at a map to relate scientific results on sea lion distribution patterns to a general, non-scientific audience.
My first attempt at a map to relate scientific results on sea lion distribution patterns to a general, non-scientific audience.

Upon hearing that this internship, starting in June, would be in Newport, Oregon, my close family and friends grew excited for me, even though I would be away from them for 10 weeks.  I, on the other hand, was not too excited. Truthfully, I was nervous. I did not want to make any assumptions about a place I had barely even heard of.  The southeast USA is my home, and upon arriving in Newport after my four hour flight and a two hour drive I realized that I was transported to a whole new world. Everything was foreign to me, from the living arrangements to the time zone.

The first adjustment I had to make was a time adjustment. In Oregon, I am three hours behind where I usually am, and let me tell you, it is not fun waking up at 3:45 when you are used to waking up at 6:45 ET. To be honest, even after three weeks, I’m still not sure I am completely adjusted to Pacific Time. I have the dark circles to prove it.

Anyone that has ever been to/lived in Georgia can accurately describe the weather in two simple words: HOT and HUMID. I am used to 100 °F days during the summer and here the highest I have yet to experience is 64°F. In other words: I am freezing my tail off! The cold windy days do not usually agree with my choice of attire. I have resorted to wearing long-sleeve shirts and hoodies on a daily basis.

But all of that aside, Oregon is the MOST breathtakingly beautiful place I have ever been to. There is nothing like the Pacific Northwest coast. After my internship is up, I would not be opposed to taking a road trip to explore this whole coast. This first month has consisted of whale watching, hikes along the big creek trails, and long walks on the beach, lots of beer, and plenty of seafood. The atmosphere of this small town is very refreshing compared to life in the city.

At the Yaquina Lighthouse, Photo by Katherine Bartels
At the Yaquina Lighthouse, Photo by Katherine Bartels

Unmanned Aircraft Systems: keep your distance from wildlife!

By Leila Lemos, Ph.D. Student, Department of Fisheries and Wildlife, OSU

Unmanned aircraft systems (UAS) or “drones” are becoming commonly used to observe natural landscapes and wildlife. These systems can provide important information regarding habitat conditions, distribution and abundance of populations, and health, fitness and behavior of the individuals (Goebel et al. 2015, Durban et al. 2016).

The benefits for the use of UAS by researchers and wildlife managers are varied and include reduced errors of population estimations, reduced observer fatigue, increased observer safety, increased survey effort, and access to remote settings and harsh environments (Koski et al. 2010, Vermeulen et al. 2013, Goebel et al. 2015, Smith et al. 2016). Importantly, data gathered from UAS can provide needed information for the conservation and management of several species. Although it is often assumed that wildlife incur minimal disturbance from UAS due to the reduced noise compared to traditional aircraft used for wildlife monitoring (Acevedo-Whitehouse et al. 2010), the impacts of UAS on most wildlife populations is currently unexplored.

Several studies have tried to comprehend the effects of UAS flights over animals and so far there is no evidence of behavioral disturbance. For instance Vermeulen et al. (2013) conducted a study where authors observed a group of elephants’ reaction or warning behavior while a UAS passed ten times over the individuals at altitudes of 100 and 300 meters, and no disturbance was recorded. Furthermore, a study conducted by Acevedo-Whitehouse et al. (2010) reported that six different species of large cetaceans (Bryde’s whale, fin whale, sperm whale, humpback whale, blue whale and gray whale) did not display avoidance behavior when approached by the UAS for blow sampling, suggesting that the system caused minimal distress (negative stress) to the individuals.

However, the fact that we cannot visually see an effect in the animal does not mean that a stress response is not occurring. A study analyzed the effects of UAS flights on movements and heart rate responses of American black bears in northwestern Minnesota (Ditmer et al. 2015). It was observed that all bears, including an individual that was hibernating, responded to UAS flights with increased heart rates (123 beats per minute above the pre-flight baseline). In contrast, no behavioral response by the bears was recorded (Figure 1).

By Leila Lemos, Ph.D. Student, Department of Fisheries and Wildlife, OSU Unmanned aircraft systems (UAS) or “drones” are becoming commonly used to observe natural landscapes and wildlife. These systems can provide important information regarding habitat conditions, distribution and abundance of populations, and health, fitness and behavior of the individuals (Goebel et al. 2015, Durban et al. 2016). The benefits for the use of UAS by researchers and wildlife managers are varied and include reduced errors of population estimations, reduced observer fatigue, increased observer safety, increased survey effort, and access to remote settings and harsh environments (Koski et al. 2010, Vermeulen et al. 2013, Goebel et al. 2015, Smith et al. 2016). Importantly, data gathered from UAS can provide needed information for the conservation and management of several species. Although it is often assumed that wildlife incur minimal disturbance from UAS due to the reduced noise compared to traditional aircraft used for wildlife monitoring (Acevedo-Whitehouse et al. 2010), the impacts of UAS on most wildlife populations is currently unexplored. Several studies have tried to comprehend the effects of UAS flights over animals and so far there is no evidence of behavioral disturbance. For instance Vermeulen et al. (2013) conducted a study where authors observed a group of elephants’ reaction or warning behavior while a UAS passed ten times over the individuals at altitudes of 100 and 300 meters, and no disturbance was recorded. Furthermore, a study conducted by Acevedo-Whitehouse et al. (2010) reported that six different species of large cetaceans (Bryde’s whale, fin whale, sperm whale, humpback whale, blue whale and gray whale) did not display avoidance behavior when approached by the UAS for blow sampling, suggesting that the system caused minimal distress (negative stress) to the individuals. However, the fact that we cannot visually see an effect in the animal does not mean that a stress response is not occurring. A study analyzed the effects of UAS flights on movements and heart rate responses of American black bears in northwestern Minnesota (Ditmer et al. 2015). It was observed that all bears, including an individual that was hibernating, responded to UAS flights with increased heart rates (123 beats per minute above the pre-flight baseline). In contrast, no behavioral response by the bears was recorded (Figure 1).
Figure 1: (A) Movement rates (meters per hour) of an adult female black bear with cubs prior to, during, and after a UAS flight (gray bar); (B) The corresponding heart rate (beats per minute) of the adult female black bear. Source: Modified from Figure 1 from Ditmer et al. 2015.

 

Therefore, behavioral analysis alone may not be able to describe the complete effects of UAS on wildlife, and it is important to consider other possible stress responses of wildlife.

Regarding marine mammals, only a few studies have systematically documented the effects of UAS on these animals. A review of these studies was produced by Smith et al. (2016) and the main factors influencing behavioral disturbance were identified as (1) noise and visual stimulus (from the UAS or its shadow), and (2) flight altitude of the UAS. Thus, studies that approach marine mammals closely with UAS (e.g., blow sampling in cetaceans) should be closely monitored for behavioral reactions because the noise level and visual stimulus will likely be increased.

Fortunately, when UAS work is applied to cetaceans and sirenians (manatees and dugongs) the air-water interface acts as a barrier to sound so these animals are unlikely to be acoustically disturbed by UAS. However, acoustic detection and response are still possible when an animal’s ears are exposed in the air during a surfacing event.

The best way to minimize stress responses in wildlife is to use caution while operating UAS at any altitude. According to National Oceanic and Atmospheric Administration (NOAA), “UAS can also be disruptive to both people and animals if not used safely, appropriately, or responsibly”. Therefore, since 2012, the Federal Aviation Administration (FAA) has required UAS operators in the United States to have a certified and registered aircraft, a licensed pilot, and operational approval, known as Section 333 Exemption (Note: in late August 2016, the 333 will be replaced by a revision to part 107). These authorizations require an air worthiness statement or certificate and registered aircraft. Public entities, like Oregon State University, operate under a certificate of authorization (COA.) As a public entity OSU certifies its own aircraft and sets standards for UAS operators. These permit requirements discourage illegal operations and improves safety.

Regarding marine mammals, all UAS operators should also be aware of The Marine Mammal Protection Act (MMPA) of 1972. This law makes it illegal to harass marine mammals in the wild, which may cause disruption to behavioral patterns, including, but not limited to, migration, breathing, nursing, breeding, feeding, or sheltering. A close UAS approach has the potential to cause harassments to marine mammals, thus federal guidelines recommend keeping a safe distance from these animals in the wild. The required vertical distance is 1000 ft for most marine mammals, but increases for endangered animals such as the North Atlantic right whales with a required buffer of 1500 ft (http://www.nmfs.noaa.gov/pr/uas.html). Therefore, NOAA evaluates all scientific research that use UAS within 1000 ft of marine mammals in order to ensure that the benefits outweigh possible hazards. NOAA distributes research permits accordingly.

Of course, with new technology the rules are always changing. In fact, last week the Department of Transportation (DOT) and the FAA finalized the first operational rules for routine commercial use of small UAS. These new guidelines aim to support new innovations in order to spur job growth, advance critical scientific research and save lives, and are designed to minimize risks to other aircraft and people and property on the ground. These new regulations include several requirements (e.g., height and speed restrictions) and hopefully allow for a streamlined system that enables beneficial and exciting wildlife research.

For my PhD project we are using UAS to collect aerial images from gray whales in order to describe behavioral patterns and apply a photogrammetry methodology. Through these methods we will determine the overall body condition and health of the individuals for comparison to variable ambient ocean noise levels. This project is conducted in collaboration with the NOAA Pacific Marine Environmental Lab.

Since October 2015, we have conducted 31 over-flights of gray whales using our UAS (DJI Phantom 3) and no behavioral disturbance has been observed. When over the whale(s) we generally fly between 25 and 40 m above the animals. We have a FAA certified UAS operator and fly under our NOAA/NMFS permit 16111. Prior to each flight we ensure that the weather conditions are safe, the whales are behaving normally, and that no on-lookers from shore or other boats will be disturbed.

Here is a video showing the launch and retrieval of the UAS system, our research vessel, the surrounding Oregon coastline beauty and gray whale individuals. The video includes some interesting footage of a gray whale foraging over a shallow reef, indicating that this UAS flight did not disturb the animal’s natural behavior patterns.

We all have the responsibility to help keep wildlife safe. Here in the GEMM Lab, we commit to using UAS safely and responsibly, and aim to use this new and exciting technology to continue our efforts to better protect and understand marine mammals.

 

References

Acevedo‐Whitehouse K, Rocha‐Gosselin A and Gendron D. 2010. A novel non‐invasive tool for disease surveillance of free‐ranging whales and its relevance to conservation programs. Anim. Conserv. 13(2):217–225.

Ditmer MA, Vincent JB, Werden LK, Tanner JC, Laske TG, Iaizzo PA, Garshelis DL and Fieberg JR. 2015. Bears Show a Physiological but Limited Behavioral Response to Unmanned Aerial Vehicles. Current Biology 25:2278–2283.

Durban JW, Moore MJ, Chiang G, Hickmott LS, Bocconcelli A, Howes G, Bahamonde PA, Perryman WL and Leroi DJ. 2016. Photogrammetry of blue whales with an unmanned hexacopter. Marine Mammal Science. DOI: 10.1111/mms.12328.

Goebel ME, Perryman WL, Hinke JT, Krause DJ, Hann NA, Gardner S and LeRoi DJ. 2015. A small unmanned aerial system for estimating abundance and size of Antarctic predators. Polar Biol. 38(5):619-630.

Koski WR, Abgrall P and Yazvenko SB. 2010. An inventory and evaluation of unmanned aerial systems for offshore surveys of marine mammals. J. Cetacean Res. Manag. 11(3):239–247.

NOAA. Unmanned Aircraft Systems: Responsible Use to Help Protect Marine Mammals. In: http://www.nmfs.noaa.gov/pr/uas.html. Accessed in: 06/12/2016.

Smith CE, Sykora-Bodie ST, Bloodworth B, Pack SM, Spradlin TR and LeBoeuf NR. 2016. Assessment of known impacts of unmanned aerial systems (UAS) on marine mammals: data gaps and recommendations for researchers in the United States1 J. Unmanned Veh. Syst. 4:1–14.

Vermeulen C, Lejeune P, Lisein J, Sawadogo P and Bouché P. 2013. Unmanned aerial survey of elephants. PLoS One. 8(2):e54700.

 

SeaBASS 2016

By Samara Haver, MSc student, OSU Fisheries and Wildlife, ORCAA Lab

As a graduate student in bioacoustics (the study of noise produced by biological sources), my education is interdisciplinary. Bioacoustics is a relatively small field, and (together with my peers) I am challenged to find my way through coursework in ecology, physiology, physics, oceanography, statistics, and engineering to learn the background information that I need to develop and answer research questions (since this is my first post for the GEMM lab, here is a little more information about my interests). While this challenge (for all young bioacousticians) presents itself a little differently at all universities, the information gap is essentially the same. Hence, just over 6 years ago, Dr. Jennifer Missis-Old and Dr. Susan Parks recognized a need to fill this gap for graduate students in bioacoustics and created SeaBASS, a BioAcoustics Summer School.

This year, for the 4th iteration of the week-long program, I was lucky to have the opportunity to attend SeaBASS. I first heard about SeaBASS as a research assistant in Dr. Sofie Van Parijs’s passive acoustics group at the Northeast Fisheries Science Center, but the workshop is limited to graduate students only so I had to wait until I was officially enrolled in grad school to apply. My ORCAA lab-mates, Niki, Selene, and Michelle are all alumni of SeaBASS (read Miche’s re-cap from 2014 here ) so by the time I was preparing for my trip to upstate NY this summer to attend, I had a pretty good idea of what was to come.

As expected, the week was packed. I flew to the East Coast a few days early to visit our fearless ORCAA leader, Holger, at the Bioacoustics Research Program at the Cornell Lab of Ornithology, so I was lucky to be somewhat adjusted to EST by the time I arrived at Syracuse on Sunday afternoon. After exploring the campus, it was time for official SeaBASS programming to begin. Our first class, an “Introduction to Acoustics and Proportion”, began early on Monday morning. In the afternoon and through the rest of the week we also learned about active acoustics (creating a sound in the water and using the echo to detect animals or other things) and marine mammal physiology, echolocation, communication, and behavior. We also heard about passive acoustics (listening to existing underwater sounds), including the different types of technology being used and its application for population density estimation. On Friday afternoon, the final lecture covered the effects of noise on marine mammals.

Samara1 Some SeaBASS-ers testing the hypothesis that humans are capable of echolocation.

In addition to the class lectures given by each instructor, we also heard individual opinions about “hot topics” in bioacoustics. This session was my favorite part of the week because we (the students) had the opportunity to hear from a number of accomplished scientists about what they believe are the most pressing issues in the field. Unlike a conference or seminar, these short talks introduced (or reinforced) ideas from researchers in an informal setting, and among our small group it was easy to hear impressions from other SeaBASS-ers afterwards. As a student I spend a lot of my time working alone; my ORCAA labmates are focused on related acoustic projects, but we do not overlap completely. The best part of SeaBASS was sharing ideas, experiences, and general camaraderie with other students that are tackling questions very similar to my own.

Samara2 SeaBASS 2016

Although a full week of class would be plenty to take in by itself, our evenings were also filled with activities. We (students) shared posters (this was mine ) about our individual research projects, listened to advice about life as a researcher in the field, attended a Syracuse Chiefs baseball game, and at the end of each day reflected on our new knowledge and experiences over pints. So, needless to say, I returned home to Oregon completely exhausted, but also with refreshed excitement about my place in the small world of bioacoustics research.

Samara3 Luckily we had beautiful weather for the baseball game!

Samara4

 

Sonic Sea asks “can we turn down the volume before it’s too late?”

By: Amanda Holdman, MS student, Geospatial Ecology and Marine Megafauna Lab & Oregon State Research Collective for Applied Acoustics, MMI

It was March 15th, 2000; Kenneth Balcomb was drinking coffee with his new summer interns in the Bahamas when a goose-beaked whale stranded on a nearby beach. Balcomb, a whale researcher and former U.S. Navy Officer, gently pushed the whale out to sea but the beaked whale kept returning to the shore. He continued this process until a second beaked whale stranding was reported further down the beach; and then a third. Within hours, 17 cetaceans had stranded in the Bahamas trying to escape ‘something’ in the water, and Kenneth Balcomb was determined to solve the mystery of the mass stranding. The cause, he eventually learned, was extreme noise – sonar tests from Navy Warships.

The world is buzzing with the sounds of Earth’s creatures as they are living, interacting, and communicating with one another, even in the darkest depths of the oceans. Beneath the surface of our oceans lies a finely balanced, living world of sound. To whales, dolphins and other marine life, sound is survival; the key to how they navigate, find mates, hunt for food, communicate over vast distances and protect themselves against predators in waters dark and deep. Yet, this symphony of life is being disrupted and sadly destroyed, by today’s increasing noise pollution (Figure 1). Human activities in the ocean have exploded over the past 5 decades with ocean noise rising by 3db per decade (Halpern et al. 2008). People have been introducing more and more noise into the ocean from shipping, seismic surveys for oil and gas, naval sonar testing, renewable energy construction, and other activities. This increased noise has significant impacts on acoustically active and sensitive marine mammals. However, as the Discovery Chanel’s new documentary Sonic Sea points out “The biggest thing about noise in the ocean is that humans aren’t aware of the sound at all.” The increase of ocean noise has transformed the delicate ocean habitat, and has challenged the ability of whales and other marine life to prosper and survive.

June blogFigure 1: Anthropogenic sources contributing to ocean soundscapes and the impacts on marine megafauna survival (sspa.se)

Like the transformative documentary from 10 years ago, An Inconvenient Truth, which highlighted the reality and dangers of climate change, Sonic Sea aims to inform audiences of increased man-made noise in the oceans and the harm it poses to marine animals. The Hatfield Marine Science Center and Oregon Chapter of the American Cetacean Society offered a free, premier showing of the award-winning documentary followed by a scientific panel discussion. The panel featured Dave Mellinger, Joe Haxel, and Michelle Fournet of Oregon State University’s Cooperative Institute for Marine Resources Studies (CIMRS) marine bioacoustics research along with GEMM Lab leader, Leigh Torres, of the Marine Mammal Institute.

Sonic Sea introduces us to this global problem of ocean noise and offers up solutions for change. The film uncovers how better ship design, speed limits for large ships, quieter methods for under water resource exploration, and exclusion zones for sonar training can work to reduce the noise in our oceans. However, these efforts require continued innovation and regulatory involvement to bring plans to action.

Around the world the scientific community, policymakers and authorities such as The National Oceanic and Atmospheric Administration (NOAA), the European Union (EU), the International Maritime Organization (IMO) and other authorities have increasingly pressed for the reduction of noise.  NOAA, which manages and protects marine life in United States waters, is trying to reduce ocean noise through their newly released Ocean Noise Strategy Roadmap, where the challenge is dealt with as a comprehensive issue rather than a case-by-case basis. This undersea map is a 10-year plan that aims to identify areas of specific importance for cetaceans and the temporal, spatial, and frequency of man-made underwater noise. After obtaining a more comprehensive scientific understanding of the distributions and effects of noise in the ocean, these maps can help to develop better tools and strategies for the management and mitigation of ocean noise.

Sonic Sea states “we must protect what we love” but then asks “how we can love it if we don’t understand it?” Here at GEMM Lab and the Marine Mammal Institute, we are trying to understand marine species ecology, distributions and behavioral responses to anthropogenic impacts. One of the suggestions Sonic Sea makes to reduce the impact of ocean noise is to restrict activity in biologically sensitive habitats. Therefore, we must know where these important areas are. In an ideal world, we would have a good inventory of data on the marine animals present in a region and when these animals breed, birth and feed. Then we could use this information to guide marine spatial planning and management to keep noise out of important habitats. My thesis project aims to provide such baseline information on harbor porpoise distribution patterns within a proposed marine energy development site. By filling knowledge gaps about where marine animals can be found and why certain habitats are critical, conservation efforts can be more directed and effective in reducing threats, such as ocean noise, to marine mammals.

Noise in our oceans is hard to observe, but its effects are visibly traumatic and well-documented. Unlike other sources of pollution to our oceans, (climate change, acidification, plastic pollution), which may take years, decades or centuries to dissipate, reducing ocean noise is rather straight forward. “Like a summer night when the fireworks end, our oceans can quickly return to their natural soundscape.” Ocean noise is a problem we can fix. To quiet the world’s waters, we all need to raise our voices so policy makers hear of this problem. That’s what Sonic Sea is all about: increasing awareness of this growing threat and building a worldwide community of citizen advocates to help us turn down the volume on undersea noise. If we sit back and do nothing to mitigate oceanic noise pollution, the problem will likely worsen. I highly suggest watching Sonic Sea.  Then, together, we can speak up to turn down the noise that threatens our oceans — and threatens us all.

Sonic Sea airs TONIGHT (6/8) for World Ocean’s Day on Animal Planet  at 10pm ET/PT!