Jose Aguilar is not here to help robots take over the world. In fact, the first year PhD student studying artificial intelligence says he’s actually working on the opposite–to ensure that AI systems are safe, and raise alarm when they’re not.
Aguilar’s research focuses on the theoretical and applied aspects of safe AI. In the theoretical realm, he tries to ensure probabilistically that a model is going to be safe. When that algorithm or model is used in a situation–like autonomous vehicles, for example–his work moves over to the application side.
And we really need safe AI! Listen to Selene and Jenna’s conversation with Jose to learn more about safe artificial intelligence and how Jose’s background of growing up in Mexico and moving to Oklahoma brought him to OSU.
Our next guest is Lauren Diaz, a fourth year PhD student in the Department of Fisheries , Wildlife and Conservation Sciences. Lauren is advised by Prof. Jim Peterson and focuses on the population dynamics of freshwater organisms.
Lauren studies rainbow trout, a widespread salmonid with important ties to recreational fishing and a complex life trajectory. The salmonid family of fish includes large species like Chinook salmon that are ecologically important food sources for both marine and terrestrial species including humans. Trout eggs hatch in freshwater but some juveniles undergo significant physiological changes and spend a large portion of their lifespan in the ocean before returning to the rivers to spawn. This ‘anadromous’ form of rainbow trout is called steelhead.
Lauren uses the Stanislaus River in California’s Central valley as a model system for understanding the impact of dams on the life histories of trout. The prominence of agriculture in the Central Valley has left its watersheds full of dams, irrigation systems and other human diversions. Monitoring fish populations throughout this complex network can be challenging due to a lack of standardization in monitoring systems. In response to this uncertainty, Lauren turns to computer simulations to shed light on the population dynamics of rainbow trout. Specifically, her simulations model the decision-making of individual fish in response to environmental stimuli. Lauren tweaks assumptions of the model such as the typical responses of trout to water depth, prey density, other fish, and tree coverage. In this way, population-level patterns emerge from a set of interpretable individual-level rules. Of particular interest to Lauren is the rate at which fish remain in the stream rather than becoming steelhead. Some preliminary evidence suggests that reduced seasonal fluctuations of water levels due to climate change could be suppressing the relative share of steelhead.
Lauren grew up in Miami, Florida, a place where encounters with tropical wildlife are part of everyday life. She was fascinated by reptiles and amphibians and became known as the “animal person” within her family and eventually studied herpetology during her undergraduate career at the University of Florida and a master’s degree at Clemson. An interest in hellbender salamanders, which live alongside rainbow trout in cool freshwater streams, led her to pursue the PhD at Oregon State. To hear more about her journey and research, tune in to KBVR 88.7 FM on Sunday, January 28th or shortly thereafter wherever you get your podcasts!
For those of us who consume dairy products, we often don’t give much thought to the trials and tribulations that had to be faced to get that product on the grocery shelves. It’s probably a fair assumption to say that most of us have never considered that cheese could explode, but that is the center of Madeleine Enriquez’s graduate research.
Madeleine (Maddie) is a master’s student in the laboratory of Joy Waite-Cusic, and she investigates dairy microbiology and spoilage, particularly mitigating “gas defects” in cheese. In semi-hard to hard cheeses certain microorganisms can cause build-up of gasses called “gas defects” which can eventually lead to blow-outs of the cheese in its packaging, or significant structural defects within the cheese (think Swiss cheese holes where they’re not supposed to be). Maddie works on practical and easy ways to mitigate these gas defects for small dairy farmers. Some of the variables include aging temperature, bioprotective cultures, or combinations of both.
Maddie’s interest in this particular area of food science originally stemmed from her grandfather, who was a dairy farmer. She went to the University of Connecticut for her bachelor’s degree in animal science. While there she participated in undergraduate research on dairy farms, particularly focusing on dairy microbiology later in her degree. This eventually led to her coming to Oregon State to further her education in dairy food science.
If you want to hear more about exploding cheese, making gouda on a weekly basis, and strapping wheels of cheese in for a CT scan, tune in for this episode of ID airing live on Jan 21, 2024.
Our next guest is Matt Vaughan, a third year PhD student in Integrative Biology working with Prof. Sarah Henkel in the Benthic Ecology Lab. Matt originally hails from Melbourne, Australia and recently joined the ID team as a host. A major theme of his research interest is biological “disturbance and change”, meaning the impact of stressors on organisms and ecosystems.
Matt’s PhD research centers around invertebrate life found on the ocean floor, known to researchers as the “Benthic zone”. He focuses especially on ghost shrimp, a type of crustacean that builds burrows on the ocean floor. In the Pacific Northwest, ghost shrimp have historically inhabited estuaries, the areas where rivers flow into the sea. Within the last decade however, a significant population of ghost shrimp has arisen much farther than expected for the species, more than seven miles off the coast of Oregon and southern Washington. This mysterious colonization could have been spurred by environmental disruptions such as climate change, and the shrimp also represent a significant change in the local ecology of the ocean floor. Firstly, ghost shrimp burrows alter the habitat for preexisting invertebrate species, reducing stability on the seafloor. The large and intricate burrows are often in high densities, and the sand they kick up through their bioturbation can affect the survival and behavior of invertebrates like bivalves. Ghost shrimp burrows also oxygenate the sediment and host vibrant microbial communities, together altering the biogeochemistry of the ocean floor.
Matt (orange hat), surveying the latest floor sample
Matt studies these ecological dynamics by surveying the ocean floor during boat trips out of Newport. His team samples the bed using box cores to collect, identify and count the invertebrates. Matt then uses computational and statistical analysis to characterize the population structure of these areas, particularly seeking to tease out the differences in species distribution between areas with and without ghost shrimp burrows. Ghost shrimp are also relatively large compared to other invertebrates in the area, so their arrival provides a significant potential food source for larger marine life like sturgeon and even gray whales. In the rest of his PhD, Matt hopes to model this trophic impact in the long term.
Spooky
To hear more about Matt’s research and how his travels to the Great Barrier Reef and Southeast Asia helped him discover his love for science, tune into KBVR 88.7 tonight at 7pm or listen soon after wherever you get your podcasts.
Trophic ecology studies how energy flows through food webs; basically who is eating whom in an ecosystem. Understanding the structure of feeding relationships among species in a system helps us to understand why populations may fluctuate in terms of abundance or distribution at different times. These dynamics are particularly important to consider in the face of a changing climate as conditions like increasing temperatures make resources less predictable. Our guest this week is Luke Bobay, who is trying to do exactly this for anchovy in the Pacific Ocean off the US West Coast.
Luke, a 3rd year PhD student in Integrative Biology, is researching the potential influences of climate change on anchovy abundance by studying its ecological effects on their early life stages. Anchovy are forage fish, which means they are eaten (aka foraged upon) by a lot of larger animals such as birds, marine mammals, other predatory fish, and humans. They are also short-lived and therefore we expect their population dynamics to respond pretty quickly to things that are happening in the environment.
For his research, Luke is looking at the larval stage of anchovy. He uses samples and plankton imagery data collected on weeks-long research cruises that Plankton Ecology Lab has conducted during the past six years, as well as samples collected by the National Oceanic and Atmospheric Administration (NOAA) since 1996. The samples that Luke uses are collected using large nets with a very fine mesh that enables the collection of tiny plankton. The imagery data are collected using a sampling technology unique to Luke’s lab called the In Situ Ichthyoplankton Imaging System (ISIIS). ISIIS uses a high-resolution camera to take images of the water column at a very high spatial and temporal scale, allowing the lab to basically take one long continuous image of what’s happening in the top 100 m of the ocean. These images are then run through an AI image classification model that automatically identifies and measures each individual plankter that is recorded. Both the net and the ISIIS also record data about the environment, such as temperature, salinity, and depth. By examining relationships between environmental conditions, the abundance of other plankton, and the abundance and other characteristics of anchovy larvae, Luke explores the factors that may contribute to variability in anchovy abundance.
In Situ Ichthyoplankton Imaging System (ISIIS)
To hear more about the day in the life of an anchovy, as well as Luke’s journey from OSU to another OSU, tune in this Sunday, November 5th live on 88.7 FM or on the live stream . Missed the show? You can listen to the recorded episode on your preferred podcast platform!
This week we are chatting with new ID host Selene Ross on her path to earning an MFA in fiction in the School of Writing, Literature, and Film. Inspired by her upbringing and life in northern California, Selene’s interest lies in looking deeper at why we believe what we believe, exploring power, women, and trust through short stories. What makes a short story different than a novel? In short stories, nothing has to change except everything to change, leading to a “surprising but inevitable” ending.
Selene began her journey at UC Santa Barbara studying Environmental Science and Sociology, focusing on the native plants of Central California. Straight from undergrad, she moved to Berlin, Germany on an au pair visa and became part of a vibrant community of writers and poets. After moving back to the U.S., Selene looked to radio as a way to do creative work and worked with various production companies prior to starting here at Oregon State. In wanting to stay connected with the audio world she is starting her own show on KBVR, Mystic Yarn, and joining us here at Inspiration Dissemination.
What does getting an MFA in creative writing look like? This program encompasses two main areas, writing workshops and more interdisciplinary “craft” classes. The workshop is where students submit original work and gather critiques from peers, while the “craft” classes are more generative, and a place to draw inspiration from other areas of creative expression, like poetry or non-fiction. The final hurdle is the thesis defense, which can take many forms depending on the area of focus. In Selene’s case, this will look like a collection of fiction short stories.
Tune in this week to hear all about her writing process, how she incorporates “spooky” into her writing, and listen to an excerpt from her work.
Per and polyfluoroalkyl substances, also known as PFAS, are widely used, long lasting chemicals, components of which break down very slowly over time. This is why you may have heard these substances called “forever chemicals.” Because of their widespread use in anything from firefighting foams to non-stick pan coating, and their persistence in the environment, many PFAS are found in the blood of people and animals all over the world. PFAS are found in water, air, fish, and soil at locations across the world and have been linked to harmful health effects, including various forms of cancer. However, the toxicity of these substances are not fully understood.
There are thousands of PFAS chemicals, and they are found in many different consumer, commercial, and industrial products, making it challenging to study and assess the potential human health and environmental risks. Additionally, it is challenging to accurately detect and quantify PFAS levels in environmental samples.
Esteban Hernandez is a chemistry PhD student conducting his research in the lab of Jennifer Field in the department of Environmental and Molecular Toxicology. His research focuses on developing fast and accurate detection techniques for PFAS. Specifically, he utilizes nuclear magnetic resonance spectroscopy (NMR), which provides an alternative to the canonical methods of PFAS detection such as mass spectroscopy. Esteban has found that utilizing NMR this way allows for detection of different varieties of PFAS, which had previously not been detectable with other methods. This has big implications for the field of PFAS research and environmental testing.
Esteban comes from a part of North Carolina that has been highly impacted by environmental PFAS contamination, sporting the title of the second worst drinking water in the country behind Flint, Michigan. His research has a very personal connection to his history and where he comes from. However, researching forever chemicals was not always his plan. He started his undergraduate journey as a theater major at Mars Hill University, eventually finding his way to chemistry and the University of North Carolina. In his undergraduate research at UNC he worked on developing an estrogen analog to help treat breast cancer. During his masters (also at UNC) he worked on synthesizing an anticancer compound originally found in sea cucumbers from the sea of Japan. Even when he came to OSU he didn’t initially think he would be working on PFAS detection. When he joined the Field lab, and consequently the field of PFAS research, he found the right fit for him. Tune in to Inspiration Dissemination this week to hear all about Esteban’s research and pathway to graduate school.
You don’t have to look hard to find signs of the long legacy of logging in Oregon. It’s evident in everything from the names of local sports teams and businesses to the clear cutting spread across nearby hills.
But in Maxville, nestled in Wallowa County in eastern Oregon, there’s a story that often goes untold. Like many Oregon towns, Maxville was a timber town, but unique to Maxville is the community of Black loggers that lived and worked there after the Great Migration of the 1920s.
Maxville Logger Company Photo, circa 1926 (Photo courtesy of the Maxville Heritage Interpretive Center, Timber Culture Photos)
Lonni Ivey is a logger’s daughter. In her family logging goes back several generations on both sides. After graduating from OSU with a BA in Philosophy & Religious Studies, she fell in love with history and religious history, specifically that of the American West. While in her MA program in History, she learned about the community of Black loggers in Maxville and immediately knew she had to learn more.
Lonni devoted her research to discovering more about Maxville and giving this story the attention it deserves, leading to her capstone project “More Than a Footnote: Erasure, Exclusion, and the Remarkable Presence of the Black Logging Community of Maxville, Oregon, 1923-33.” Lonni was inspired by Gwendolyn Trice, the founder and executive director of the Maxville Heritage Ideology Center and herself the descendant of one of the Maxville Loggers.
At a time when Oregon’s constitution included laws excluding Black people from the state, the mere presence of a community like Maxville was remarkable, let alone their perseverance and persistence to thrive in such a racially hostile environment. Recruited by the Bowman-Hicks Lumber Company, these experienced loggers traveled in boxcars to Wallowa County all the way from states like Mississippi, Louisiana, Alabama, and Arkansas. Eventually, their families began to join them, and this influx of people proved to be a major economic boom for Wallowa County. Maxville had a Black baseball team, a post office, hotel, and the first segregated school in Oregon’s history.
As a white historian researching a community of color, and one that has been erased and excluded for generations, it was important to Lonni to acknowledge that this research requires relationship building and that communities of color have the right to deny access to historical records to external researchers. In Lonni’s work she seeks to platform Black contributions to Oregon history and address racial inequalities and racism. Lonni’s own family’s history is one of racism and white supremacy, and she views her work not as redeeming her family (whom she no longer has contact with) but instead as reparative action to address the harm that racism has enacted in this state.
As a non-traditional and disabled student, advocacy and allyship is central to Lonni’s work. She graduated in June 2023, presenting her project at the 100th anniversary commemoration of Maxville. She hopes to work as an advocate for minorized communities and to get grant funding for further research and digitization of the archive at the Wallowa County Museum.
Tune in Sunday, August 20th at 7pm on KBVR 88.7 to hear more!
Maxville today. Photo taken by L. Ivey June 2, 2023
We have a special guest this week on Inspiration Dissemination, our own Dr. Grace Deitzler (she/they) who is graduating this term with a PhD in Microbiology! Grace was on an episode of ID earlier in her degree and has served as a host since 2021. In this episode, we will mostly cover the remainder of Grace’s PhD work and give them a send-off both from OSU and from ID.
In the early part of her PhD, Grace worked on mice models of autism and examined the effects of bacterial infection on autism-like behaviors. Since then, her research has focused on a much different species – honeybees. A connective thread between these two disparate phases of research is the “double-hit hypothesis”. This refers to the idea that two concurrent stressors on an organism can increase vulnerability to or severity of disease, beyond the impact of either stressor individually. In mice, the two stressors were a simulated maternal infection during gestation and a subsequent infection of the offspring. In honeybees, the double-hit of interest to Grace is treatment with probiotics after an infection, in this case by a microsporidian fungus.
In comparison with mice or humans, honeybees have a very homogeneous microbiome, with just 8-10 bacterial species accounting for around 95% of the total. The minimalism of the honeybee microbiome and its conservation across individuals suggests that the insect and its bacteria have co-evolved for millions of years. As pollinators, honeybees are of vast ecological and economic importance, with $20 billion in agricultural activity sustained by managed colonies in the US. Beekeepers are understandably interested in protecting their colonies from infection by pathogens such as fungi and foreign bacteria. Much like the probiotic shakes marketed for human consumption, companies have developed probiotic products for honeybees and marketed them towards keepers.
Grace’s research findings cast this practice into doubt. They exposed the pupae to Nosema, a common fungal pathogen that targets the bees’ gut. Then they treated some bees with probiotics. Somewhat counterintuitively, infected individuals treated with probiotics died more quickly than those not fed probiotics! Premature death due to probiotic administration was even observed among healthy bees not exposed to the pathogen. This surprising result spurred Grace to investigate possible mechanisms for probiotic-induced mortality. The Nosema infection damages the bee’s microbiome, eliminating many species from the gut. Grace found that although the probiotic partially restores some of these bacterial species, it leads to more subtle disequilibria in the microbiome at the level of specific bacterial strains. She hypothesizes that this imbalance induces stress that is enough to worsen the bee’s ability to survive. Their results also raise questions about the efficacy of current honeybee probiotics, which appear to do more harm than good. After final analyses are complete, these results will be available in a forthcoming paper.
The work (counting bees)The reward (counting degrees)
To hear more about the details of bees and bacteria as well as Grace’s experiences in science communication, tune in this Sunday, June 11th, at 7PM on 88.7 KBVR.
This week’s guest is Alexander Butcher, a second-year master’s student in the Department of Crop and Soil Science. Alexander has a wide variety of interests related to minimizing food waste and improving global food security, but his current research focuses on protecting potato crops from insect pests.
Typical chemical pesticides are effective deterrents against invading insects but can cause significant harm to the environment and to humans. Such substances can present health risks to the farm workers that apply the pesticides as well as the consumers who purchase and eat the treated crops. Runoff from agriculture can also cause damage to surrounding ecosystems. In light of these downsides, scientists are interested in finding safer alternatives to conventional pesticides. Alexander studies an alternative class of chemicals called elicitors, which act as signals to activate defense mechanisms of plants. Plants have evolved numerous chemical and structural defenses for fending off insect and microbial attackers as well as competing against other plant species. One such product of this evolutionary arms race is the caffeine that you might enjoy in your morning cup of coffee. Elicitors can selectively turn these defenses on or off. This gives farmers and plant breeders a lot more possibilities for using plant defenses to manage insects.
The Colorado potato beetle
Alexander’s research focuses on potatoes, which are an important agricultural product in northeastern Oregon along the Washington border. One of the biggest insect pests of potato is the Colorado potato beetle. Alexander is testing strategies for using two synthetic chemical analogs of natural plant signal hormones– salicylic acid and jasmonic acid — to stimulate the natural defenses of potato plants. Jasmonic acid is a phytohormone that promotes defenses against insects that chew, like the Colorado potato beetle. Some of Alexander’s research shows that these defenses can lower the weight of beetles. He thinks that this is due to protease inhibitors, which disrupt the enzymes insects use to digest proteins. Similarly, salicylic acid plays a major signaling role in plant development and defenses against insects that pierce into the plant and suck out fluids, like aphids. While these natural products have the potential to serve as affordable and effective pesticides, their sublethal effects lag behind the efficacy of more lethal chemicals. To help close this gap, Alexander has been researching how potato defenses induced by elicitors can impact the behavior of the beetle and its ability to reproduce.
Alexander first came to an interest in agriculture through his passion for food. He was classically trained in French cuisine and worked as a chef for twelve years, where he experienced first-hand the amount of waste that happens in the food system. His travels in countries affected by food insecurity helped solidify a desire to return to school, and he attended Portland State for a degree in biology. Despite his day job defending crops from insect invaders, he maintains a significant interest in bugs, founding an entomology club at Oregon State. Alexander will be transitioning into the PhD degree in the fall and switching topics towards defending vineyards from vine mealybugs. He eventually hopes to pursue a career in academic research and education.
Alexander treating crops with elicitors
To hear more about Alexander’s story, including why he advocates for insects as a sustainable protein source, tune in this Sunday, May 28th, at 7PM on KBVR 88.7 FM.
