Tiny Messengers, Big Impact: Exploring the Gut–Brain Axis

Your gastrointestinal tract is home to hundreds of bacterial species that play essential roles in digestion and metabolism. As this field of research expands it is becoming increasingly clear that these microbes influence systems beyond the gut: they can even impact brain functioning. These effects were once thought to occur indirectly over the span of minutes to hours through complex chemical signaling pathways. Over the past 15 years, however, scientists have discovered that gut bacteria can communicate directly with the brain via the nervous system, transmitting signals in a matter of seconds and reshaping how we understand the gut–brain axis.

This week, we were joined by Kevin Rice, a fourth-year PhD candidate in the Department of Microbiology, co-advised by Dr. Maude David and Dr. Kenton Hokanson. Kevin’s research focuses on how human gut cells interact with neurons and the role that the microbiome may play in influencing neurodevelopmental disorders. Through his work across both Microbiology and Biochemistry & Biophysics, he combines computational approaches with neuroscience techniques to better understand the big impact our microbial communities can have on human health.

Check out the recording of this episode on our podcast page to hear Kevin talk about how pursuing scientific questions has shaped his perspective on what constitutes a worthwhile career and the implications of his work in understanding neurodevelopmental disorders.

Knock, knock! Black-backed Woodpeckers have arrived, and it’s not where you’d expect

In Oregon, the Black-backed Woodpecker is considered a “keystone” species and indicator of bird community health. They create critical nest holes for other cavity-nesting birds and small mammals. Black-backed Woodpeckers are described as post-burn specialists that prefer burned conifer forests, particularly because it is where bark beetle larvae and other food sources are abundant after wildfires. However, Black-backed Woodpeckers are also known to inhabit green, unburned conifer forests, but the extent to which they use green forests throughout their range is poorly understood.

Mark Kerstens, a third year PhD student in Sustainable Forest Management under the mentorship of Dr. Jim Rivers, studies these fickle birds with the hope to understand what drives them to inhabit green forests. His main research interests are how to manage forests both before and after wildfires to provide habitat for cavity-nesting birds, and to use these species as indicators for ecosystem health. As a masters student he studied Black-backed Woodpecker vital rates in fire-prone landscapes in South/Central Oregon. For his PhD he is expanding this work, potentially redefining Black-backed Woodpeckers not as post-burn specialists, but rather “early decayed wood specialists”. Through his work he hopes to better inform forest management for biodiversity, and use these woodpeckers as a biodiversity indicator.

To hear all about beautiful birds, Oregon’s incredible lodgepole pine ecosystems, and the pre-med to scientist pipeline, tune in to 88.7FM KBVR Corvallis at 7PM PST on May 31, or listen after the show wherever you get your podcasts!

Written by Hannah Stuwe

The Gamification of Music Education

Virtual reality (VR) offers a unique opportunity to create interactive learning experiences that maintain the reciprocal engagement of in-person environments while allowing for flexible scheduling. Simulated chemistry and biology labs, for example, can significantly reduce hazardous waste and eliminate ethical concerns associated with the use of animals in classroom settings. Another advantage of VR in education is its ability to adapt to individual learners, meeting students where they are in their comprehension and supporting personalized learning. Expanding this technology into other areas of education holds great potential for increasing accessibility and improving learning outcomes.

Our guest this week is Bonnie Kraxberger, a second-year graduate student in the College of Education. Bonnie will graduate this summer with a Master’s degree in Adult and Higher Education, along with a Graduate Certificate in Instructional Design. As both an education program developer and a music teacher who navigated the challenges of remote instruction during the COVID-19 pandemic, she is passionate about developing technologies that support effective independent learning. Bonnie entered graduate school with the goal of creating a virtual environment to teach adults the fundamentals of music literacy. Her project brings learning to life with creative elements like seashell-shaped musical notes and pirates playing bongos—an imaginative approach that makes learning both engaging and fun. I’ve never wanted to take a music class so badly!

Tune in this Sunday, May 17th at 7 PM to hear Bonnie discuss the challenges of accurately integrating sound into virtual learning environments, as well as the successes she’s achieved by prioritizing her goals while balancing graduate school and parenthood.

Wolves, Cougars and the Fight for Food in Yellowstone

Yellowstone National Park is known for its stunning landscapes and wilderness, housing some of North America’s most iconic apex carnivores, such as wolves and cougars. However, these animals do not live in isolation from one another – they often interact and compete for prey.

Extracting a cougar from a tree

Our guest this week is Wes Binder, a PhD Candidate in the Department of Fisheries, Wildlife and Conservation Sciences, who has spent many years in Yellowstone and is researching these complex interactions. Using GPS telemetry data, camera traps, and field investigations of kill sites, he aims to understand the mechanisms that drive these interactions and how they vary with diets, dominance hierarchies, and environmental conditions.

Cougar collar deployment

To learn more about the dynamics of wolf and cougar interactions, as well as Wes’s experiences working with large animals in Yellowstone, tune in to KBVR 88.7FM this Sunday, May 10 at 7:00pm. You can listen to the episode anywhere you listen to your podcasts, including on KBVRSpotifyApple, or anywhere else!

Wes fording with a hound

Written by Matthew Vaughan.

Context Matters in Physics Education

Education research is a budding scientific field of study which seeks to explore the interactions between learning processes, human attributes and institutional structures that influence a student’s receptiveness or enjoyment of a given subject. Here at OSU, researchers in the Department of Physics recognize the under-representation of diverse identities in their field and working to uncover the underlying causes of this. Turns out that the context of class questions and an individual’s gender expression may play a role.

Our guest this week is Noah Leibnitz, a 4th year Ph.D. candidate in the Department of Physics. Advised by Dr. Doris Li, Noah conducts research on physics education. His two projects here at OSU are centered around a single idea: student retention in the physics discipline. Noah is conducting pioneering research to understand what aspects of physics education act as barriers and deterrents for students and their interest in physics. Early on in his graduate education Noah realized that he enjoyed engaging with others much more than he enjoyed working with equipment which has led him to a research career that balances his interests in physics, conversational research, and teaching.

Tune in this Sunday, May 3rd @7pm to hear Noah talk about what it’s like to conduct interviews as part of his research and describe the intricacies of designing problems that are not only challenging, but interesting to solve as well.

Understanding the Vole picture

Many wildlife populations experience change over time. For some, this can be defined as “boom” and “bust” periods – cycles of change where population numbers rise and fall. Understanding these can be a major challenge for scientists and wildlife managers, particularly for species who have not historically been monitored. One such species with limited data is the gray-tailed vole, a rodent species endemic to the Willamette Valley.

Our guest this week is Austin Nash – a first-year PhD student seeking to better understand and manage the population cycles of gray-tailed voles. His research focuses on how disease and weasel predators may influence vole movement, survival, and reproduction. To do so, Austin is deploying a wide range of methods, including landscape scale genetics, field experiments, establishing a long-term monitoring program, and running population simulation models.

To hear more about Austin’s plans to better understand vole populations in Oregon, as well as his unique array of experiences leading him to OSU and making him the ideal person for the task, tune in to KBVR 88.7FM this Sunday (April 26) at 6:30pm. You can listen to the episode anywhere you listen to your podcasts, including on KBVRSpotifyApple, or anywhere else!

Written by Matthew Vaughan.

It’s a RNA’s World and We’re all Living in it

The central dogma of molecular biology is a theory stating that genetic information flows only in one direction, from DNA, to RNA, to protein. However, since the fundamental theory was developed by Francis Crick in 1958, scientists have discovered several exceptions to the theory. This includes prions and retroviruses. Prions are infectious proteins which replicate without going through DNA or RNA intermediates and are responsible for diseases such as mad cow disease, and Creutzfeldt-Jakob disease. A retrovirus is a virus that uses RNA as its genomic material, rather than DNA. In addition to the expansion of the central dogma, molecular biology has expanded its knowledge of the functionality of RNA beyond producing protein. A non-coding RNA (ncRNA) is an RNA molecule that is not translated into a protein. It is estimated that as much as 80% of the human genome encodes ncRNAs. Many of the newly identified ncRNAs have unknown functions, making it a new and exciting frontier in molecular biology.
This week’s guest is Sanjay Ramprasad, a post-doctoral researcher in the lab of David Hendrix, and recent PhD grad from the department of Biochemistry and Biophysics. Sanjay’s research focuses on using computational techniques to discover new functions and structures of ncRNAs. To hear all about the transition from PhD to post doc, the expansive frontier of RNA biology, and how one goes from the social sciences to biophysics, tune in at 7PM on April 19th to 88.7 FM KBVR Corvallis, or check out the show on our podcast pages.

A pear a day keeps the doctor…wishing for pear varieties with better rooting abilities

Imagine you are in the produce section of the grocery store picking out your fruit for the week, and you remember the apple marketing slogan “an apple a day keeps the doctor away”. Once you make your way over to the apples, you are almost guaranteed to find a variety that fits your preference for taste and texture. These varieties are only made possible because of grafting techniques, a method for combining and reproducing desirable traits in fruit trees. Pear cultivation uses similar techniques, but producing desirable traits such as dwarfing, that apples so readily display remains a challenge in pear cultivation. This is why the selection of pear varieties is so dwarfed (pun intended) compared to that of apples.

This week on the show we are joined by Claire Pierce, a 2nd year master’s student in the Department of Horticulture. Claire is co-advised by Kelsey Galimba (OSU) and Jessica Waite (USDA-ARS), and conducts her research at the Hood River Research Station. The long-term goal of Claire’s research is to diversify the available rootstocks used in the pear industry and improve yield for agricultural pear cultivation. The first step is to find compatible rootstocks (the base of the plant) and scions (the top of the plant) that exhibit dwarfing characteristics, something that is limited in the current pear industry. The next step is developing root structure phenotype characterization methods; a classically tricky task to accomplish due to the roots being hidden underground and all that.

Tune into KBVR 88.7 FM at 7:00 pm PST on April 12th to hear Claire talk about how she is overcoming these challenges and gaining valuable experience along the way. Claire’s story is one filled with moments of being in the right place at the right time and leaning into making connections. If you want to see more pictures of Claire’s work and follow her through her field season this year, check out the Galimba Pear and Cherry Research Lab Instagram account @galimbalabosu.

From Space to the Sea: Oceanography Across Multiple Spatiotemporal Scales

One of the greatest modern day science tools is satellite imagery. The remote capture of images from space allows researchers to understand spatial ecology better than ever before. However, it’s imperative to know that what you can glean from remote sensing is accurate to what’s occurring at the ground (or sea) level. In fact, if you were looking at a satellite image the minute it’s taken, and zoomed all the way in, you might see a research vessel with Alexander Bailess on board.

Alexander is a second-year Ph.D. student in the College of Earth, Ocean, and Atmospheric Sciences, joint-advised by Dr. Maria Kavanaugh and Dr. Andrew Barnard. Part of his doctoral research is ground-truthing, or verifying, remote sensing data by sailing the seas and collecting data at the same time that satellites are.

 Alexander holding an underwater camera system for satellite matchups aboard the R/V Ruben Lasker.

At sea, Alexander is also looking for a phytoplankton called Pseudo-nitzschia. Almost half of Pseudo-nitzschia species produce a potent neurotoxin called domoic acid (DA) which can cause a disorder in humans called amnesic shellfish poisoning. Harmful algae blooms (HABs) occur during dense aggregations of Pseudo-nitzschia, poisoning organisms with DA across the trophic web. Work like Alexander’s is important because it can help establish monitoring and management systems for HABs, allowing recreational and commercial fisheries to avoid toxic conditions. Fishermen citizen scientists also assist in this research by collecting water at-sea for researchers, like Alexander, to analyze.

A photo of a Pseudo-nitzschia (credit: Wikipedia).

Alexander’s work has taken him on dozens of research cruises all along the U.S. west coast. He is also a Scientific Diver and Divemaster, meaning his work often takes him below the sea surface as well — conducting surveys that connect what satellites see from above to what is living in the water below.

Alexander collecting water samples in an underground aquifer.
Alexander on the S/V Tara, working with a new prototype for measuring ocean color.

Written by: Taylor Azizeh

Entering Tsunami Hazard Zone

Look out the window of a car driving along Oregon’s coastal highway 101 and you will see many roadside signs indicating the boundaries of the coastal tsunami zone. Natural phenomena can cause massive amounts of damage to the communities that happen to lie in their paths, the effects of which can last days, months, and even years beyond the actual event. In the wake of disaster, people are often unable to access necessary resources or are left stranded waiting for help. Community design and engineering don’t always take into account the personal lived needs of those within the community, therefore a human centered approach is needed to compliment quantitative disaster projections and more accurately predict the most effective plan for community recovery.

This is where engineering and social science collide. Our guest this week is Amina Meselhe, a 2nd year PhD student in the School of Civil and Construction Engineering. Amina’s current PhD project involves simulating the damage and recovery trajectories for the Cascadia Subduction Zone in the event of a tsunami. Her self-described research goal is to “create tangible outcomes for people to hold onto”. Her acute awareness for disaster preparedness comes from the fact that she grew up in Louisiana seeing the damage that hurricanes can cause and the lasting effects they have on people.

Tune into KBVR 88.7 FM at 7:00 pm PST on March 8th to hear Amina talk about what she is doing to improve the preparedness of communities along the Oregon coast, the research methods used by engineers to incorporate social science into their designs, and why “natural disaster” is a taboo term in the field.