| Fall Term 2014 | |
| October 1, 2014 | Robert Cardiff Center for Comparative Medicine University of California, Davis Overdiagnosis and Overtreatment in Cancer: Lessons from the Mouse Host: Siva Kolluri |
| October 15, 2014 | John Hammer Molecular Cell Biology Section NIH: National Heart, Lung & Blood Institute Using mouse coat color mutants to explore motor protein: organelle interactions Host: Valerian Dolja |
| October 29, 2014 | Jennifer Pett-Ridge Physical & Life Sciences Directorate Lawrence Livermore National Laboratory From cradle to grave: Microbial C transformations in the rhizosphere Host: David Myrold |
| November 12, 2014 | James Van Etten Department of Plant Pathology University of Nebraska-Lincoln Unusual Lifestyle of Giant Algal Viruses Host: Thomas Wolpert |
| Winter Term 2015 | |
| January 21, 2015 | A.S.N. Reddy Department of Biology Colorado State University Global analysis of targets of a splicing regulator in Arabidopsis: Implications in stress responses Host: Sergei Filichkin |
| February 4, 2015 | Daniel Bikle Department of Medicine & Dermatology University of California, San Francisco The vitamin D receptor as a tumor suppressor in skin Host: Arup Indra |
| February 18, 2015 | Jason Stajich Plant Pathology and Microbiology Dept University of California, Riverside Evolutionary and functional genomics in early diverging fungi Host: Nik Grünwald |
| March 4, 2015 | Ilya Shmulevich Institute for Systems Biology Integrative Analysis of Data from The Cancer Genome Atlas Host: Stephen Ramsey |
| March 10, 2015 | C. Titus Brown UC Davis Genome Center Concepts and tools for exploring very large sequencing data sets: how can we move more quickly to hypotheses? Host: Thomas Sharpton |
| Spring Term 2015 | |
| April 1, 2015 | Mike Waterman National Academy of Sciences Member Biological Sciences, Mathematics and Computer Science University of Southern California Using Word Counts for Alignment Free Sequence Analysis Seminar co-sponsors: Mathematics Department, Statistics Department, School of Computer Science and Electrical Engineering |
| April 15, 2015 | No seminar |
| April 29, 2015 | Adam Bogdanove Plant Pathology & Plant-Microbe Biology Cornell University Diversity of TAL effectors in nature in relation to their utility in genome editing and other DNA targeting applications Host: Steve Strauss |
| May 13, 2015 | Susan Tilton Environmental & Molecular Toxicology Oregon State University An integrative systems toxicology approach to understanding environmental risk factors in lung disease |
| May 27, 2015 | Adreas Bäumler Dept of Medical Microbiology & Iummunology University of California, Davis How the host response feeds Enterobacteriaceae Host: Luiz Bermudez |
Author Archives: girarda
Spring Conference 2014
Monday, April 7, 2014
Poster Award Winners
Postdoc/Trainee/Faculty: Jonathan Galazka
Grad student: Renee Bellinger
Undergrad student: Steven Hill
Program
| 8:00 | Registration & refreshments (Poster & lightning talk slides setup) |
| 9:00 | Brett Tyler, Director, CGRB Opening Remarks |
| Moderator: Glencora Borradaile | |
| 9:10 | Gail Rosen, Drexel University Computational Challenges in Processing Metagenomic Data |
| 10:00 | Break (Poster & lightning talk slides setup) |
| 10:30 | Thomas Sharpton, OSU, Microbiology/Statistics From Noise to Signal: Mining Human Exome Sequences Reveals the Hunter-Gatherer Oral Microbiome |
| 10:55 | Stephen Giovannoni, OSU, Microbiology The Broad Implications of Genome Streamlining |
| 11:20 | Christopher Sullivan, OSU, CGRB Managing data across different experiments, hardware platforms and research groups |
| 11:45 | Lunch and Poster Session Turn in poster ballot envelopes to registration desk for counting by 2:00pm |
| Moderator: Yuan Jiang | |
| 2:00 | Arash Termehchy, OSU, Electrical Engineering and Computer Science Design Independent Data Exploration |
| 2:25 | David Hendrix, OSU, Biochemistry and Biophysics, Electrical Engineering and Computer Science Surfing the Noncoding RNA tidal wave |
| 2:50 | Stephen Ramsey, OSU, Biomedical Sciences, Electrical Engineering and Computer Science An Integrative Computational Systems Biology Approach for Mapping Gene Regulatory Networks |
| 3:15 | Break |
| Moderator: Thomas Sharpton | |
| 3:50 | Awards Ceremony, Brett Tyler |
| 4:00 | Sandrine Dudoit, UC Berkeley Normalization of RNA-Seq Data |
| 4:50 | Thomas Dietterich, OSU, Distinguished Professor and Director of Intelligent Systems Closing Remarks |
CGRB Seminar Series 2013-2014
Spring Conference 2013
Monday, June 3, 2013
Program
| 8:00 | Registration & refreshments (Poster & lightning talk slides setup) |
| 9:00 | Brett Tyler, Director, CGRB Opening Remarks |
| Moderator: Molly Kile, College of Public Health & Human Sciences | |
| 9:15 | Katrina Waters, Pacific Northwest National Laboratory Integration of Multiple Omics Data for Network Reconstruction of Viral Pathogenesis |
| 10:15 | Natalia Shulzhenko, OSU College of Veterinary Medicine Antibiotic-induced Changes in Microbiota and Its Host: A Multi-omics Perspective |
| 10:35 | Break (Poster & lightning talk slides setup) |
| 11:10 | Cindy Grimm, OSU Mechanical, Industrial & Manufacturing Engineering Research Analyzing Shape Change in Biological Structures |
| 11:30 | Edward Waymire, OSU Department of Mathematics Some Dynamic, Stochastic and Numerical Problems from Biology |
| 11:55 | Lunch and Poster Session Turn in poster ballot envelopes to registration desk for counting by 2:00pm |
| Moderator: Yanming Di, Statistics | |
| 2:00 | E. Andrés Houseman, OSU College of Public Health DNA Methylation Arrays and Cell Mixtures |
| 2:25 | Yuan Jiang, OSU Department of Statistics Identification of Differentially Expressed Genes by Adjusting the Non-Uniformity in RNA-Seq Data |
| 2:50 | Break |
| 3:20 | Molly Megraw, OSU Department of Botany & Plant Pathology Promoter Architecture in Plant Model Systems |
| 3:45 | Joe Beckman, OSU Environmental Health Sciences Center Closing remarks |
| 4:00 | Awards Ceremony |
CGRB Seminar Series 2012-2013
Fall Conference 2010
September 19-20, 2010
Program
| 3:00 pm | Registration & poster setup |
| 4:00 | Welcome Reception |
| 5:00 | Jim Carrington, CGRB DirectorModerator: Lynda Ciuffetti |
| 5:10 | Christopher Sulliivan, CGRB “Recent Advances within the CGRB Computational Infrastructure” |
| 5:20 | Mark Leid, Pharmaceutical Sciences“Ctip2/Bcl11b: A Top-Level Regulator of Cell Fate in Multiple Developmental Systems” |
| 5:45 | Elliot Meyerowitz, California Institute of Technology“Chemical and Physical Signals and their Interactions in Plant Stem Cell Control” |
| 6:30-9:00 | Poster Session and Sponsor Displays |
| 8:30 am | Coffee and Pastries |
| 9:00 | Joseph Spatafora, Botany & Plant Pathology“Tolypocladium inflatum: A Home Grown Genome” |
| 9:25 | Pallavi Phatale, Botany & Plant Pathology“Genetic Studies to Uncover Rules for Centromere Inheritance” |
| 9:50 | Jay Dunlap, Dartmouth Medical School”Genetic and Molecular Dissection of a Simple Circadian System” |
| 11:00 | P. Andrew Karplus, Biochemistry and Biophysics“A Beneficial Bulge: TT-Helices and the Evolution of Proteins” |
| 11:25 | Richard Spinrad, Vice President for Research“OSU Research Now, Next, and After Next” |
| 1:15 | Award Presentation |
| 1:20 | Gary Ruvkun, Harvard Medical School“Phylogenetic Profiling of the Small RNA Pathway Genes of C. elegans” |
| 2:05 | Doug Bryant, Electrical Engineering and Computer Science“Next-Generation Hybrid Empirical-ab initio Gene Prediction” |
| 2:30 | Daniel Schafer, Statistics“Some Lessons from the Biometry of Evolution and the Evolution of Biometry” |
| 3:30 | Gene D.Kundson Lectures featuring Peter & Rosemary Grant, Princeton University“Evolution of Darwin’s Finches: The Roles of Genetics, Ecology and Behavior” |
| 5:00 | Kundson Lectures Reception |
CGRB Seminar Series 2010-2011
| Fall Term 2010 | |
| October 6, 2010 | Sophien Kamoun The Sainsbury Laboratory John Innes Centre Norwich, United Kingdom “The secrets of a plant killer: Evolution and function of Phytophthora effectors” Host: Niklaus Grunwald |
| October 20, 2010 | Matteo Pellegrini Department of Molecular, Cell and Developmental Biology University of California, Los Angeles “Epigenetic and Transcriptomic Profiling using Illumina Sequencers” Host: Jim Carrington |
| November 3, 2010 | Canceled |
| November 17, 2010 | Judith Berman Department of Genetics, Cell Biology and Development University of Minnesota “Centromeres and neocentromeres in Candida albicans” Host: Michael Freitag |
Postponed to January 26, 2011 | Inder Verma Laboratory of Genetics The Salk Institute for Biological Studies “Cancer: a malady of genes” Host: Arup Indra |
| Winter Term 2011 | |
| January 12, 2011 | Cancelled |
| January 26, 2011 | Inder Verma Laboratory of Genetics The Salk Institute for Biological Studies “Cancer: a malady of genes” Host: Arup Indra |
| February 9, 2011 | W. Kelley Thomas Hubbard Center for Genome Studies University of New Hampshire “Ultra-deep 454 sequencing of the meiofaunal biosphere: practice, promises and pitfalls” Host: Dee Denver |
| February 23, 2011 | Cancelled |
| March 9, 2011 CANCELLED | Danny Schnell Biochemistry and Molecular Biology University of Massachusetts at Amherst “Studies of Chloroplast Protein Targeting and Membrane Expansion as a Model for Understanding Organelle Biogenesis and Homeostasis” Host: Valerian Dolja |
| Spring Term 2011 | |
| April 6, 2011 | Ruedi Aebersold Institute of Molecular Systems Biology Eidgenössische Technische Hochschule Zürich Zürich, Switzerland “Proteomics and Systems Biology” Host: Mark Leid |
| April 20, 2011 | Jeffrey Townsend Department of Ecology and Evolutionary Biology, Yale University “Phylogenetic and comparative transcriptomic analysis of fungal fruiting body development”Host: Joey Spatafora |
| Friday, April 29, 2011 | Ellen Rothenberg Division of Biology California Institute of Technology“ Transcriptional control of T-cell lineage identity” Host: Mark Leid |
| June 1, 2011 | Graham Hatfull Department of Biological Sciences University of Pittsburgh “Exploration and Exploitation of Mycobacteriophages” Hosts: Dee Denver, Theo Dreher and Barbara Taylor |
Fall Conference 2009
September 20-21, 2009
Program
| 3:00 pm | Registration & poster setup |
| 4:00 | Welcome Reception |
| 5:00 | Jim Carrington, CGRB DirectorAchievements of the Computational & Genome Biology Initiative |
| 5:20 | Noah Fahlgren, MCB Graduate ProgramSmall RNA Transcriptome Profiling and Evolution |
| 5:40 | Jason Cumbie, MCB Graduate ProgramComputational and Statistical Tools for Type III Effector Transcriptome Profiling |
| 6:00 | Kristina Smith, Biochemistry & BiophysicsEvolution of Centromeres in Filamentous Fungi |
| 6:25 | Steve Jacobsen, University of California, Los AngelesDNA Methylation |
| 7:05-9:00 | Poster session; Sponsor displays |
| 8:30 am | Coffee and Pastries |
| 9:00 | Chrissa Kioussi, College of PharmacyGoodies for the Tooth Fairy: Ctip2 and the Production of Enamel |
| 9:25 | Adrian Gombart, Linus Pauling InstituteVitamin D and Human Innate Immunity |
| 9:50 | Joseph Thornton, University of OregonEvolution of Protein Structure and Function in the Steroid Hormone Receptor Family |
| 10:55 | Pankaj Jaiswal, Botany & Plant PathologyOntologies for Plant Genomics and Phenomics |
| 11:20 | Olivier Voinnet, Institut de Biologie Moleculaire des Plantes du CNRS, StrasbourgGenomics, Mechanisms and Roles of Small Silencing RNA |
| 1:00 | Announcement of Poster Awards |
| 1:10 | Roundtable Discussion – Issues Affecting Research, Funding & Education in Molecular Biosciences at OSUPanelists: Howard Grimes, Washington State University; Sonny Ramaswamy, Oregon State University; Steve Jacobsen, UCLA; Michael Lynch, Indiana University |
| 3:05 | Michael Lynch, Indiana UniversityThe Origins of Genome Complexity |
| 3:45 | William Cresko, University of OregonPopulation Genomic Analysis of Stickleback Evolution Using Illumina-Sequenced RAD tags |
Fall Conference 2008
Saturday & Sunday, October 4-5, 2008
Program
| 12:00 pm | Registration & Poster setup |
| 1:00 | Jim Carrington, Director, CGRB Introduction, CGRB update |
| 1:10 | New Technologies in CGRBMark Dasenko, Chris Sullivan, Caprice Rosato, Anne-Marie Giirard – CGRB Core Labs |
| 1:45 | Peter Dolan, Zoology, “TileQC: A System For Tile-Based Quality Control and Data Manipulation” |
| 2:10 | Patrick Chappell, Zoology “Molecular Circadian Clock Regulation of Mammalian Reproduction” |
| 2:35 | Brian Wall, Office of Technology Transfer “The OSU Venture Fund: Bridging the Research Support Gap” |
| 3:30 | Erica Bakker, Horticulture “Genome-Wide Pathogenicity Gene Discovery in Botrytis cinerea” |
| 3:55 | Detlef Weigel, Max Planck Institute for Developmental Biology “Whole-Genome Variation and its Impact on Reproductive Isolation in Arabidopsis thaliana” |
| 4:45 | Poster Session, Sponsor’s Displays and Open Bar |
| 7:45-11:00 | Entertainment, Announcement of Awards |
| 7:30 am | Continental Breakfast |
| 8:30 | Arup Indra, College of Pharmacy “CTIP – A Novel Regulator of Skin Organogenesis” |
| 8:55 | Xiaoli Fern, Electrical Engineering & Computer Science “Ensemble and Multi-View Data Clustering” |
| 9:20 | Steven Brenner, University of California, Berkeley “Ultraconserved Nonsense: Gene Regulation by Splicing and RNA Surveillance” |
| 10:30 | Vincent Remcho, Chemistry “Materials and Methods for the Design, Fabrication, and Application of Microfluidic Tools for Chemical Analysis” |
| 10:55 | Brendan Jeffery, MCB Graduate Program “Chlamydial Biology and Genomics” |
| 11:20 | Thomas Wolpert, Botany and Plant Pathology “A Downside to Plant Disease Resistance, Good LOV Gone Bad” |
| 11:45-1:00 | Lunch |
Fall Conference 2007
Saturday-Sunday, September 29-30, 2007
Program
| 12:00 pm | Registration and Poster setup |
| 1:00 | Jim Carrington, Director, CGRB Welcome, Updates and Announcements |
| 1:20 | Gary Merrill, Biochemistry and Biophysics “MCB Core Program Curriculum Revisions” |
| 1:35 | Darryl Conte, University of Massachusetts Medical Center “Dicer-Related Helicases: Defining Conserved Complexes and New RNAi-Related Pathways in C. elegans” |
| 2:10 | Tai Montgomery, MCB Graduate Program “ARGONAUTEs and Silencing Specificity” |
| 3:05 | Siva Kullori, Environmental and Molecular Toxicology “Signaling from Nucleus to Mitochondria: Nuclear Receptor Nur77 Based Cancer Therapeutics” |
| 3:30 | Michael Freitag, Biochemistry and Biophysics “Centromere Assembly and Maintenance” |
| 3:55 | Shelley Halpain, University of California, San Diego “MAPs, MARCKS, and Morphology: A Few Keys to Neuronal Development” |
| 5:00 | Poster Session, Sponsors’ Displays and Open Bar |
| 6:45 | Dinner |
| 8:00-12:00 | Entertainment, Announcement of Awards |
| 8:45 am | Jeff Chang, Botany and Plant Pathology “Functional Genomic Screen for Type III Effectors of Mutualistic Rhizobia” |
| 9:10 | Martin Schuster, Microbiology “Social Cheating in Pseudomonas aeruginosa Quorum Sensing” |
| 9:35 | Jennifer Nemhauser, University of Washington “Manipulation and Dissection of Plant Growth Control Networks” |
| 10:45 | Valerian Dolja, Botany and Plant Pathology “Origin of Viruses and Cells in Light of Comparative Genomics” |
| 11:10 | Joe Beckman, Linus Pauling Institute “Mass Spectometry of Native Proteins from Brain: Understanding How SOD Causes ALS” |
| 11:35 | Theresa Filtz, Pharmaceutical Sciences “Lipids, Dimers, Phosphates, Calcium and Lipase: Fine Tuning the Regulation of a Common Signaling Pathway” |
| 12:00 pm | Lunch |