From Owl Pellets to Pacific Fisheries

Laura Vary, M.S. student in Marine Resource Management  

Laura Vary with her father, who introduced her to science at a young age.
Beginnings of a scientist

I first became a scientist when I was four years old. I was crouching beneath a large pine tree in the woods of my backyard with my father standing beside me. We were inspecting an oblong, dark brown conglomeration. My dad explained that this mysterious thing was an owl pellet, likely excreted by one of the screech owls inhabiting our property. He palmed the pellet and we walked back to my house along the wooded path, my mind expanding as he described all that the little pellet could contain. 

Back in our garage, my father showed me how to carefully break apart the pellet using tweezers. He pulled out small rodent bones, teeth, and other unidentifiable fragments tangled in the coarse hair that held the pellet together. We dissected many of these in the months that followed, transforming my backyard into my first field site. My interest in ecology grew as I watched the dynamics of robins, cardinals, foxes, and chipmunks in those woods. They introduced me to basic biology as I found treasures including a complete, bleached possum skeleton and an intact still-born coyote pup. My biochemist father taught me all he knew about our woods during frequent walks in the evenings, stoking my enthusiasm and helping me to learn that the world of science could be mine. 

Though I lived inland near lakes and rivers teeming with small spotted sunfish and bass, I was drawn to the craggy granite shoreline of Maine’s coast. I would rock-hop away from my mother as she read to seek out hidden tide pools that burst with barnacles and mussels and small periwinkles. By sixth grade I was determined to become a marine biologist. 

to another coast, far away

My mission to become a marine biologist led me, surprisingly, to the drought-stricken Central Valley of California where I studied marine and coastal science at the University of California at Davis. I was immediately drawn to the school after learning about UC Davis’ Bodega Marine Laboratory. Strategically located at the site of one of the most productive areas of the California coast, Bodega Marine Lab houses all varieties of innovative University of California undergraduate and graduate marine ecosystem research. With urging from my father to “follow the research” and extensive emotional support from my mother, I moved 3,300 miles away from my family. 

I joined my first undergraduate research project in the spring of my freshman year in the Ecology and Evolution Department with the Wainwright Lab studying the morphological evolution of teleost fishes. I traveled to the Smithsonian Museum’s Collections Facility in Maryland with a small group of my peers, and together we measured preserved specimens of Teleostei fishes. These measurements, and others taken by more undergraduates in following years, produced one of the largest public databases of linear measurements of fishes available today. This work resulted in the presentation of my first research project utilizing a subset of these data at the 28th Annual Undergraduate Research Conference. 

Studying morphological evolution at the Smithsonian

Then, after a year-long digression in terrestrial plant ecology, my first significant experimental failure, and the completion of physically exhaustive biology courses, I finally arrived at Bodega Marine Lab in August of 2018. I studied coastal and biological oceanography and assisted with research in Steve Morgan’s planktonic fisheries ecology lab. I counted fish larvae and eggs and became endlessly fascinated with the expansive world that fit within the view of my microscope. I returned to this lab after graduation in 2019 to become a paid research technician. In this dream role I learned identification of invertebrate larvae, how to distinguish one species of krill from another, and organized a science crew and team of volunteers to evaluate marine protected areas off the Sonoma Coast. The Morgan Lab became my second home; I understood my priorities as a researcher and progressive member of a new wave of scientists and determined what my future after graduation would look like.

Searching for fish larvae and eggs in plankton samples

From marine biologist to marine resource manager

Upon reflection of my undergraduate education, I realized that solving complex matters like sustainable ocean management and climate change requires an interdisciplinary framework. Furthermore, I learned that the waves of change I wanted to make would be more difficult to achieve with my Bachelor’s degree alone. The recognition of these goals led me to Oregon State’s research-focused yet extremely interdisciplinary marine resource management program. In the College of Earth, Ocean, and Atmospheric Sciences I will work with Dr. Lorenzo Ciannelli in his fisheries oceanography lab. Using fish plankton data, I plan to research the ability of fishes like halibut, cod, and pollock to alter the timing (phenology) and location (geography) at which they spawn. I strive to understand the biological flexibility of these species and how it relates to the future of their populations, reliant commercial and Indigenous fisheries, and the larger marine ecosystem. I am driven by the need to understand what confers resilience in fish populations, and how we – as stewards – can learn from traditional native practices, historical environmental dynamics, and robust predictive models to create sustainable ecosystems and restore balance in the ocean.

Researching Marine Protected Areas (and Olive Rockfish) off the California Coast.

My path in science has always been driven by a clear goal to promote sustainability and revitalization within our global ecosystems. I hope that more people find room for research and science in their daily lives as this goal intersects so many fundamental aspects of human life. A common misconception for many is that scientists are highly trained individuals that dedicate their lives to research… we are not. We are inquisitive people that look at our world, make observations, and ask questions, just as I did when I was young. I want more people to understand that their voices and actions are deeply influential in the scientific world, and I will dedicate my future in research to ensuring the inclusivity of academia, management, and conservation. Science needs everyone!

Follow Laura on Twitter @resultscan_Vary

A Tale of Two Seeps

By Lila Ardor Bellucci, Ph.D Student in Ocean, Earth and Atmospheric Sciences

Lila Ardor Bellucci sampling deep sea mud. Image courtesy of Marley Parker.

Methane seeps are places where methane gas escapes from reservoirs below the seafloor into the overlying waters. These seeps support unique and fascinating benthic communities that provide habitat and food to other deep-sea fauna, while also keeping methane from reaching the atmosphere. Because methane is a powerful greenhouse gas, scientists are interested in studying seeps to see what role they might play in climate change. Seep ecosystems may also be a source of energy, biopharmaceutical compounds, and valuable rare earth elements, all of which could contribute to the US “Blue Economy.” As we humans explore these potential resources, scientists like me are working to better understand seep communities and their functions to inform future management. This article is about two seeps my team and I encountered during an October 2020 expedition to find and characterize methane seeps along the Cascadia Margin – about 80 miles off the coasts of Oregon and Washington.

Looking off the back deck of the E/V Nautilus at the remotely operated vehicle (ROV) Argus. Image courtesy of Lila Ardor Bellucci.
Ocean exploration

Part of the fun in exploring never-before-seen parts of the ocean is that it’s hard to predict what you’re going to find. Prior to entering graduate school, I participated in ocean exploration and research aboard the E/V Nautilus and R/V Neil Armstrong as a member of their Science Management and Marine Technician teams. This unpredictability was always one of my favorite parts of the job, and the same was true of my lab’s recent E/V Nautilus cruise to explore methane seeps along the Cascadia Margin. Even across similar ocean depths and latitudes, seep sites can vary dramatically in appearance and function, and in the animals and microbes that live there. One reason for this variation is that seeps can be thought of as having lifetimes and can look very different at different phases in their lives. During our recent cruise, we were lucky to find seeps at opposite ends of these phases, often called “successional stages.”

Searching for seeps

One of the first remotely operated vehicle (ROV) dives we had planned was to a site where past sonar data had indicated exciting wide-spread bubbling. The multibeam sonar is an acoustic tool, mounted to the ship’s hull, that allows researchers to map the seafloor and also detect methane seep bubble streams. As we came over the site, sitting about 1,000 meters (3,280 feet) below us, we were disappointed to find no trace of bubbles in our multibeam data. Would we descend and not be able to find the seep?

When Lila and the other scientists see bubble plumes like this, they know there will be methane leaking from the seafloor, but they never know what it is going to look like until the ROV actually gets down there. Image courtesy of Oregon State University, NOAA OER, NOAA OCNMS, Ocean Exploration Trust, NA-121.
First seep

We decided to dive anyway, and the risk paid off. Shortly after reaching the seafloor, we were surprised to come across massive piles of carbonate rock, looming above ROV Hercules like dark towers. This type of rock is formed by the methane-eating reaction of bacteria and archaea (single-celled organisms, often found in extreme conditions) that live at seeps. Carbonate rocks of this size could have taken hundreds or even thousands of years to form! Similar to an old growth forest with large trees, the existence of these massive towers told us that the seep must be at a later successional stage in its life. Although we came across living clam beds, often found at methane seeps, this impressive site was no longer the bubbling frenzy it may once have been during its younger days. 

Carbonate rocks, created as a byproduct of methane being eaten by microbes, provide a home for many animals from octopods to mushroom corals.  You can also see expansive microbial mats in the fissures between rocks; this fauna is living on a shallow dusting of mud overlying even more carbonate rock. Video courtesy of Oregon State University, NOAA OER, NOAA OCNMS, Ocean Exploration Trust, NA-121.
Unexpected discovery

Our next discovery was even more unexpected. On our way to the late successional stage seep site, our multibeam mapping team noticed a large bubble plume in the sonar data, again about 1,000 meters (3,280 feet) deep. Although we hadn’t initially planned on it, we decided to take a chance and investigate further. As the ROVs (Hercules and its stabilizing companion Argus) descended, we picked up the acoustic signals of bubbling from over 100 meters (328 feet) off the seafloor, using an ROV-mounted sonar. When we arrived at the bottom, we were greeted by one of the largest microbial mats any of us had ever seen.

Second seep

As we navigated around its edge to gain our bearings, we realized that the mat of dense, white and gray bacteria seemed to go on forever, covering at least 50 square meters. As we explored its interior, we found numerous bubble plumes on the northern edge of the mat, filled with small tube worms and surrounded by extensive clam beds. This was a textbook young seep, in an early successional stage and (to our delight!) still soft and perfect for taking sediment core samples. At older sites, taking cores can be difficult because of those carbonate rocks that form, blocking the core tube as we try to push it in.

The research team collecting sediment cores at the early successional stage seep site. This video is sped up four times.  Video courtesy of Oregon State University, NOAA OER, NOAA OCNMS, Ocean Exploration Trust, NA-121.
Collecting sediment cores

I should mention that, while the collection of sediment cores and other samples may seem like a simple task, each sample we collected was actually the collective achievement of a whole team. Our team was made up of the various specialists and scientists that ran each dive from within the “control van” aboard the ship, as well as those who joined us from land via satellite-enabled telepresence. While we (the science team and data loggers) dictated and recorded sampling, pilots manipulated ROVs and mechanical arms thousands of feet below them, navigators managed the position of the ship, and video engineers controlled the ROV cameras that we all used to see. 

Processing samples

Each of the samples we collected on our dives was then processed as soon as the ROVs came back on deck. Because we ran 24/7 operations on the E/V Nautilus, both dives and sample processing could occur at any time of day. In the case of our “young” seep dive, processing our glorious cores and other samples took us over 7 hours. This was in addition to the 8 hours each of us spent on watch in the control van, in my case from 12 to 4 (both AM and PM). It was cold, it was muddy, and it was non-stop, but it was a whole lot of fun and all worth it. The samples we collected from these two diverse seeps, as well as the others we visited during our cruise, will now enable us to better understand these diverse seep habitats from various angles.


Although studying individual seep sites really well can be very valuable, it’s also important to study a broad range of seeps when trying to gain a better understanding of them. As this tale of two seeps shows, even nearby seeps can be very different, each telling us part of a larger deep-sea story. Unexpected discoveries like this help us to shape our understanding of a seep’s lifetime, thereby providing valuable guidance for future research.

Originally published on the NOAA Office of Exploration and Research website as a mission log for E/V Nautilus cruise NA-121: “Gradients of Blue Economic Seep Resources”.

A Kriller Antarctic Winter

By Kirsten Steinke, Ph.D. student in Ocean Ecology and Biogeochemistry

Kirsten Steinke

I wake up and rub my eyes as my 5:45 alarm goes off in the morning.  Still pitch black out my window, I quickly throw on my workout clothes, grab my yoga mat and head to the lounge for 6 am group yoga. After spending thirty minutes waking up my muscles, I head to the gym for my morning workout routine with my buddy Ken: a three-mile run on the treadmill while watching an episode of Rick and Morty. Sufficiently sweaty, I head to the girl’s bathroom (which is way nicer than the one I have at home) and take a quick shower. Finally awake, I head back to my room and get my stuff together for the long day of work. I look out my window again and the sun is just starting to rise behind the glacier. I stop what I’m doing and take a minute to just watch. I can hardly believe that this is the view I get to start my day with every morning.

The sunrise at Palmer Station, Antarctica

After the winter solstice on June 22, the sun started returning rapidly to our region of the Western Antarctic Peninsula (wAP). The sunrise is a welcome site as in the dead of winter we were only getting about 3-4 hours of sunlight every day. In total, our OSU research team spent about six months conducting research and living at one of the Antarctic research stations owned by the United States Antarctic Program (USAP): Palmer Station. Palmer is situated on Anvers Island in the northern part of the Western Antarctic Peninsula. The smallest of the three research stations run by USAP, Palmer looks out over the Southern Ocean and the vast mountain ranges that are typical of the Antarctic Peninsula. The setting is spectacular: We watch icebergs float in and out of the surrounding bays and listen to the earth-shattering eruptions of the glacier calving nearby. One iceberg, dubbed Old Faithful, got stuck in the bay and stays with us all season. It is comforting in a way to see it standing faithfully by each day as we begin our field work.

Old Faithful, our most loyal iceberg

“Why on Earth are you going to Antarctica in the middle of winter?” was a common question that I, and the rest of my research team, got asked. Believe it or not, the changes that occur in Antarctic ecosystems during the winter are poorly understood. Our team of krill researchers sought to fill some of these knowledge gaps as we conducted experiments on the overwintering of arguably the most important keystone species in Antarctic ecosystems: Antarctic krill. These tiny crustaceans, about as big as the length of your pinky as adults, support most of the top predators in the Antarctic ecosystem. Whales, penguins, seals, fish and other seabirds rely on krill as their primary food source.

Antarctic krill, Euphausia superba. Photo credit: Australian Antarctic Program

Our research project was designed by my advisor, Dr. Kim Bernard. She’s interested in how the warming at the northern wAP affects the food available to krill throughout the autumn and winter. The northern wAP is warming quicker than most other places on Earth, which has altered the food web dynamics at the northern WAP. Krill feed primarily on diatoms (microscopic algae) and copepods (microscopic zooplankton). The warming temperatures have resulted in declines in diatoms but more copepods at the northern wAP. Winter is a critical life history stage for young krill as food availability decreases in response to lower light levels. We wanted to know how this climate-induced change in food availability, compounded by the overall lower levels of food availability, affects the physiology of young krill. Hence, six months of Antarctic research collecting, observing, and learning from our kriller friends.

Out collecting food for our krill

While these six months may have been the most demanding of my Ph.D. career, they were also some of the best months of my life. We worked long hours in the lab and out in the field six days a week, making sure we had enough resources to support our long-term feeding experiment and to carry out our physiological experiments. Similar to the krill, we learned how to adapt to the extreme winter conditions. We got used to working in complete darkness, learned which path to take to work when winds were blowing over 100 knots and discovered that the quickest way to warm our fingers and toes after a long day of field work was to hold them directly against the small space heater in our office.

The sunset reflecting off the newly formed sea ice
Palmer Station welcoming the evening light

Our long field season at Palmer Station, Antarctica finally came to an end in the middle of October. In addition to the hundreds of samples that we successfully obtained from our research project, we left Palmer with new memories, incredible stories and 17 new friends that we were lucky enough to call our polar family. This experience was truly one of the greatest of my life and I cannot wait until our next field season starts in February 2021. It’s going to be kriller.

The 2019 Antarctic research team. OSU CEOAS graduate Julia Fontana (left), OSU CEOAS Associate Professor Dr. Kim Bernard (Center), OSU CEOAS PhD Student Kirsten Steinke (right)