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Koehn, A.C., D.L. Bjorneberg, R.W. Malone, A.B. Leytem, A. Moore, L. Ma, and P.N.S. Bartling. 2021. Simulating soil nitrogen fate in irrigated crop production with manure applications. Science of The Total Environment 793:148510. doi: 10.1016/J.SCITOTENV.2021.148510.

Diniz, W.J.S., G. Bobe, J.J. Klopfenstein, Y. Gultekin, T.Z. Davis, A.K. Ward, and J.A. Hall. 2021. Supranutritional Maternal Organic Selenium Supplementation during Different Trimesters of Pregnancy Affects the Muscle Gene Transcriptome of Newborn Beef Calves in a Time-Dependent Manner. Genes 12:1884. doi: 10.3390/genes12121884.

Selover, B., J. Johnson, and J.G. Waite-Cusic. 2021. Population dynamics of coliforms in a commercial Cheddar cheese production facility. Journal of Dairy Science 104:7480–7488. doi: 10.3168/JDS.2020-19808.

Selover, B., and J.G. Waite-Cusic. 2021. Growth potential and biofilm development of nonstarter bacteria on surfaces exposed to a continuous whey stream. Journal of Dairy Science 104:6508–6515. doi: 10.3168/JDS.2020-19837.

Johnson, J., B. Selover, C. Curtin, and J. Waite-Cusic. 2021. Non-starter bacterial communities in aged Cheddar cheese: Patterns on two timescales. Applied and Environmental Microbiology. doi: 10.1128/AEM.01939-21

Lin, S., C.A. Medina, O.S. Norberg, D. Combs, G. Wang, G. Shewmaker, S. Fransen, D. Llewellyn, and L.-X. Yu. 2021. Genome-Wide Association Studies Identifying Multiple Loci Associated With Alfalfa Forage Quality. Frontiers in Plant Science 12:976. doi: 10.3389/fpls.2021.648192.

Qu, Y., B.-J. Kim, J. Koh, and D.C. Dallas. 2021. Analysis of Bovine Kappa-Casein Glycomacropeptide by Liquid Chromatography–Tandem Mass Spectrometry. Foods 10. doi: 10.3390/foods10092028 .

Phillips, I.L., L. Danelishvili, and L.E. Bermudez. 2021. Macrophage Proteome Analysis at Different Stages of Mycobacterium avium Subspecies paratuberculosis Infection Reveals a Mechanism of Pathogen Dissemination. Proteomes 9. doi: 10.3390/proteomes9020020.

Habeeb, H.M.H., and M. Anne Kutzler. 2021. Estrus Synchronization in the Sheep and Goat. Veterinary Clinics of North America: Food Animal Practice 37:125–137. doi: 10.1016/J.CVFA.2020.10.007.

Rosa, F., S. Busato, F.C. Avaroma, R. Mohan, N. Carpinelli, M. Bionaz, and J.S. Osorio. 2021. Short communication: Molecular markers for epithelial cells across gastrointestinal tissues and fecal RNA in preweaning dairy calves. Journal of Dairy Science 104:1175–1182. doi: 10.3168/JDS.2020-18955.

O’Hara, K.C., J. Ranches, L.M. Roche, T.K. Schohr, R.C. Busch, and G.U. Maier. 2021. Impacts from Wildfires on Livestock Health and Production: Producer Perspectives. Animals 11(11):3230. doi: 10.3390/ani11113230.

Koh, J., B.J. Kim, Y. Qu, H. Huang, and D.C. Dallas. 2021. Top-Down Glycopeptidomics Reveals Intact Glycomacropeptide is Digested to a Wide Array of Peptides in Human Jejunum. The Journal of Nutrition. doi: 10.1093/jn/nxab400.

Ferraris, Q., A. Alcazar, and M.C. Qian. 2021. Profiling polar lipids in whey protein phospholipid concentrate by LC-HRMS/MS. Food Chemistry 131495. doi: 10.1016/J.FOODCHEM.2021.131495.

Busato, S., and M. Bionaz. 2021. When Two plus Two Is More than Four: Evidence for a Synergistic Effect of Fatty Acids on Peroxisome Proliferator—Activated Receptor Activity in a Bovine Hepatic Model. Genes 12:1283. doi: 10.3390/GENES12081283.

Maruyama, S., J. Lim, and N.A. Streletskaya. 2021. Clean Label Trade-Offs: A Case Study of Plain Yogurt. Frontiers in Nutrition 8:462. doi: 10.3389/fnut.2021.704473 .

Johnson, J., C. Curtin, and J. Waite-Cusic. 2021. The Cheese Production Facility Microbiome Exhibits Temporal and Spatial Variability. Frontiers in Microbiology 12:381. doi: 10.3389/fmicb.2021.644828 .

Nam, J.H., Y.S. Cho, B. Rackerby, L. Goddik, and S.H. Park. 2021. Shifts of microbiota during cheese production: impact on production and quality. Applied Microbiology and Biotechnology 105:2307–2318. doi: 10.1007/s00253-021-11201-5.

Taylor Rhodes, M., and F. Kuchler. 2021. Determinants of weekly raw milk use by at-home meal preparers in the USA: evidence from the 2014–2016 American Time Use Survey – Eating and Health Module. Public Health Nutrition 24:487–498. doi: 10.1017/S136898002000066X.

Bionaz, M., E. Vargas-Bello-Pérez, and S. Busato. 2020. Advances in fatty acids nutrition in dairy cows: from gut to cells and effects on performance. Journal of Animal Science and Biotechnology 2020 11:1 11:1–36. doi: 10.1186/s40104-020-00512-8.

Ferraris, Q., J. Hale, E. Teigland, A. Rao, and M.C. Qian. 2020. Phospholipid analysis in whey protein products using hydrophilic interaction high-performance liquid chromatography-evaporative light-scattering detection in an industry setting. Journal of Dairy Science 103:11079–11085. doi: 10.3168/jds.2020-18687.

Krueger, A., J. Cruickshank, E. Trevisi, and M. Bionaz. 2020. Systems for evaluation of welfare on dairy farms. Journal of Dairy Research 87:13–19. doi: 10.1017/s0022029920000461.

Tsai, C.-Y., F. Rosa, M. Bionaz, and P. Rezamand. 2020. Effects of 2,4-thiazolidinedione (TZD) on milk fatty acid profile and serum vitamins in dairy goats challenged with intramammary infusion of Streptococcus uberis. Journal of Dairy Research 87:416–423. doi: 10.1017/s0022029920000941.

Phillips, I.L., J.L. Everman, L.E. Bermudez, and L. Danelishvili. 2020. Acanthamoeba castellanii as a Screening Tool for Mycobacterium avium Subspecies paratuberculosis Virulence Factors with Relevance in Macrophage Infection. Microorganisms 8:1571. doi: 10.3390/MICROORGANISMS8101571.

Clausen, G., S. Nemanic, J. Vanegas, S.M. Stieger-Vanegas, and K.P. Poulsen. 2020. Computed tomography of tympanic bullae in pre-weaned dairy calves diagnosed with clinical respiratory disease. The Veterinary Journal 264:105546. doi: 10.1016/J.TVJL.2020.105546.

Ryan, E.L., J.J. Klopfenstein, and M.A. Kutzler. 2020. Intramammary antibiotics with complementary acupuncture decreases milk serum N-acetyl-beta-D-glucosaminidase concentrations in dairy cattle with subclinical mastitis. Reproduction in Domestic Animals 55:1747–1755. doi: 10.1111/RDA.13835.

Mezzetti, M., M. Bionaz, and E. Trevisi. 2020. Interaction between inflammation and metabolism in periparturient dairy cows. Journal of Animal Science 98:S155–S174. doi: 10.1093/JAS/SKAA134.

Busato, S., and M. Bionaz. 2020. The interplay between non-esterified fatty acids and bovine peroxisome proliferator-activated receptors: results of an in vitro hybrid approach. Journal of Animal Science and Biotechnology 11:1–13. doi: 10.1186/S40104-020-00481-Y.

Choi, J., S.I. Lee, B. Rackerby, R. Frojen, L. Goddik, S.-D. Ha, and S.H. Park. 2020. Assessment of overall microbial community shift during Cheddar cheese production from raw milk to aging. Applied Microbiology and Biotechnology 104:6249–6260. doi: 10.1007/S00253-020-10651-7.

Jaaf, S., B. Batty, A. Krueger, C.T. Estill, and M. Bionaz. 2020. Selenium biofortified alfalfa hay fed in low quantities improves selenium status and glutathione peroxidase activity in transition dairy cows and their calves. Journal of Dairy Research 87:184–190. doi: 10.1017/S002202992000028X.

Choi, J., S.I. Lee, B. Rackerby, L. Goddik, R. Frojen, S.-D. Ha, J.H. Kim, and S.H. Park. 2020. Microbial communities of a variety of cheeses and comparison between core and rind region of cheeses. Journal of Dairy Science 103:4026–4042. doi: 10.3168/JDS.2019-17455.

Wilson, R. L., M. Bionaz,  J.W. MacAdam, K.A. Beauchemin, H.D. Naumann, S. Ates. 2020. Milk production, nitrogen utilization, and methane emissions of dairy cows grazing grass, forb, and legume-based pastures. Journal of Animal Science 98:1-13. doi: 10.1093/JAS/SKAA220.

Carmona-Flores, L. , M. Bionaz , T. Downing, M. Sahin, L. Cheng , S. Ates. 2020. Milk Production, N Partitioning, and Methane Emissions in Dairy Cows Grazing Mixed or Spatially Separated Simple and Diverse Pastures. Animals 10:1–21. doi: 10.3390/ANI10081301.

Armstrong, S.A., D.J. McLean, M. Bionaz, and G. Bobe. 2020. A natural bioactive feed additive alters expression of genes involved in inflammation in whole blood of healthy Angus heifers. Innate Immunity 26:285–293. doi: 10.1177/1753425919887232.

Dombrowski, J.E., B.A. Kronmiller, V. Hollenbeck, and R.C. Martin. 2020. Transcriptome Analysis of Wounding in the Model Grass Lolium temulentum. Plants 9:780. doi: 10.3390/PLANTS9060780.

Downing, T., S. Ates, and J. Cruickshank. 2019. Development of an Index to Rank Ryegrass Varieties for Milk Production or Beef Gains Potential. Journal of NACAA 12:ISSN 2158-9429. https://www.nacaa.com/journal/17246814-7ca8-4353-8789-24ed105e302e

Batty, D., L. Meunier-Goddik, and J.G. Waite-Cusic. 2019. Camembert-type cheese quality and safety implications in relation to the timing of high-pressure processing during aging. Journal of Dairy Science 102:8721–8733. doi: 10.3168/JDS.2018-16236.

Preble, I., Z. Zhang, R. Kopp, M. Garzotto, G. Bobe, J. Shannon, and Y. Takata. 2019. Dairy Product Consumption and Prostate Cancer Risk in the United States. Nutrients 11:1615. doi: 10.3390/NU11071615.

Batty, B.S., and M. Bionaz. 2019. Graduate Student Literature Review: The milk behind the mustache: A review of milk and bone biology. Journal of Dairy Science 102:7608–7617. doi: 10.3168/JDS.2019-16421.

Meunier-Goddik, L., & J. Waite-Cusic. 2019. Chapter 15 – Consumers Acceptance of Raw Milk and its Products. In L. A. Nero & A. F. de Carvalho (Eds.), Raw Milk: Balance Between Hazards and Benefits (pp. 311–350). Academic Press. doi: 10.1016/B978-0-12-810530-6.00015-8

Rosa, F., M. Moridi, J.S. Osorio, J. Lohakare, E. Trevisi, S. Filley, C. Estill, and M. Bionaz. 2019. 2,4-Thiazolidinedione in Well-Fed Lactating Dairy Goats: II. Response to Intra-Mammary Infection. Veterinary Sciences 6:52. doi: 10.3390/VETSCI6020052.

Jaaf, S., F. Rosa, M. Moridi, J.S. Osorio, J. Lohakare, E. Trevisi, S. Filley, G. Cherian, C.T. Estill, and M. Bionaz. 2019. 2,4-Thiazolidinedione in Well-Fed Lactating Dairy Goats: I. Effect on Adiposity and Milk Fat Synthesis. Veterinary Sciences 6:45. doi: 10.3390/VETSCI6020045.

Hiebel, K., L. Gentle, A. Menino, and M. Kutzler. 2019. Acupuncture prevents the postpartum reduction in matrix metalloproteinase type-2 immunoexpression, tissue concentration and enzyme activity in bovine caruncles. Reproduction in Domestic Animals 54:1010–1017. doi: 10.1111/RDA.13456.

Swanson, K., M. Kutzler, and M. Bionaz. 2019. Cow milk does not affect adiposity in growing piglets as a model for children. Journal of Dairy Science 102:4798–4807. doi: 10.3168/JDS.2018-15201.

Sischo, W.M., D.A. Moore, R. Pereira, L. Warnick, D.L. Moore, J. Vanegas, S. Kurtz, K. Heaton, D. Kinder, J. Siler, and M.A. Davis. 2019. Calf care personnel on dairy farms and their educational opportunities. Journal of Dairy Science 102:3501–3511. doi: 10.3168/JDS.2018-15401.

Batty, D., J.G. Waite-Cusic, and L. Meunier-Goddik. 2019b. Influence of cheese-making recipes on the composition and characteristics of Camembert-type cheese. Journal of Dairy Science 102:164–176. doi: 10.3168/JDS.2018-14964.

Risner, D., E. Tomasino, P. Hughes, and L. Meunier-Goddik. 2019. Volatile aroma composition of distillates produced from fermented sweet and acid whey. Journal of Dairy Science 102:202–210. doi: 10.3168/JDS.2018-14737.

Snider, A.P., D. McLean, and A.R. Menino. 2019. Effects of feeding OmniGen-AF® on superovulatory response in donor beef cows: I. Serum progesterone and cortisol, embryo recovery and quality. Animal Reproduction Science 210:106174. doi: 10.1016/J.ANIREPROSCI.2019.106174.

Lohakare, J., J.S. Osorio, and M. Bionaz. 2018. Peroxisome proliferator-activated receptor β/δ does not regulate glucose uptake and lactose synthesis in bovine mammary epithelial cells cultivated in vitro. Journal of Dairy Research 85:295–302. doi: 10.1017/S0022029918000365.

Zandkarimi, F., J. Vanegas, X. Fern, C.S. Maier, and G. Bobe. 2018. Metabotypes with elevated protein and lipid catabolism and inflammation precede clinical mastitis in prepartal transition dairy cows. Journal of Dairy Science 101:5531–5548. doi: 10.3168/JDS.2017-13977.

Dallas, D., and S.D. Nielsen. 2018. Milk Peptidomics to Identify Functional Peptides and for Quality Control of Dairy Products. Methods in Molecular Biology 1719:223–240. doi: 10.1007/978-1-4939-7537-2_15.

Risner, D., A. Shayevitz, K. Haapala, L. Meunier-Goddik, and P. Hughes. 2018. Fermentation and distillation of cheese whey: Carbon dioxide-equivalent emissions and water use in the production of whey spirits and white whiskey. Journal of Dairy Science 101:2963–2973. doi: 10.3168/JDS.2017-13774.

Bigouette, J.P., J.W. Bethel, M.L. Bovbjerg, J.G. Waite-Cusic, C.C. Häse, and K.P. Poulsen. 2018. Knowledge, Attitudes and Practices Regarding Raw Milk Consumption in the Pacific Northwest. Food Protection Trends, 38:104–110. http://www.foodprotection.org/publications/food-protection-trends/archive/2018-03-knowledge-attitudes-and-practices-regarding-raw-milk-consumption-in-the-pacific-northwest/

Rosa, F., S. Busato, F.C. Avaroma, K. Linville, E. Trevisi, J.S. Osorio, and M. Bionaz. 2018. Transcriptional changes detected in fecal RNA of neonatal dairy calves undergoing a mild diarrhea are associated with inflammatory biomarkers. PLOS ONE 13:e0191599. doi: 10.1371/JOURNAL.PONE.0191599.

Kuhn, E., L. Meunier-Goddik, and J.G. Waite-Cusic. 2018b. Short communication: Snapshot of industry milk hauling practices in the western United States. Journal of Dairy Science 101:1960–1966. doi: 10.3168/JDS.2017-13279.

Kuhn, E., L. Meunier-Goddik, and J.G. Waite-Cusic. 2018a. Effect of leaving milk trucks empty and idle for 6 h between raw milk loads. Journal of Dairy Science 101:1767–1776. doi: 10.3168/JDS.2017-13387.

Apperson, K.D., W.R. Vorachek, B.P. Dolan, G. Bobe, G.J. Pirelli, and J.A. Hall. 2018. Effects of feeding pregnant beef cows selenium-enriched alfalfa hay on passive transfer of ovalbumin in their newborn calves. Journal of Trace Elements in Medicine and Biology 50:640–645. doi: 10.1016/J.JTEMB.2018.05.014.

Fowler, J., S.M. Stieger-Vanegas, J.A. Vanegas, G. Bobe, and K.P. Poulsen. 2017. Comparison of thoracic radiography and computed tomography in calves with naturally occurring respiratory disease. Frontiers in Veterinary Science 4. doi: 10.3389/fvets.2017.00101.

Rosa, F., J.S. Osorio, E. Trevisi, F. Yanqui-Rivera, C.T. Estill, and M. Bionaz. 2017. 2,4-Thiazolidinedione Treatment Improves the Innate Immune Response in Dairy Goats with Induced Subclinical Mastitis. PPAR Research 2017:7097450. doi: 10.1155/2017/7097450.

Nielsen, S.D., R.L. Beverly, Y. Qu, and D.C. Dallas. 2017. Milk bioactive peptide database: A comprehensive database of milk protein-derived bioactive peptides and novel visualization. Food Chemistry 232:673–682. doi: 10.1016/J.FOODCHEM.2017.04.056.

Hall, J.A., A. Isaiah, C.T. Estill, G.J. Pirelli, and J.S. Suchodolski. 2017. Weaned beef calves fed selenium-biofortified alfalfa hay have an enriched nasal microbiota compared with healthy controls. PLOS ONE 12:e0179215. doi: 10.1371/JOURNAL.PONE.0179215.