{"id":96,"date":"2009-04-07T17:43:35","date_gmt":"2009-04-08T00:43:35","guid":{"rendered":"http:\/\/blogs.oregonstate.edu\/psquared\/?p=96"},"modified":"2009-04-08T11:03:41","modified_gmt":"2009-04-08T18:03:41","slug":"the-face-of-a-protein","status":"publish","type":"post","link":"https:\/\/blogs.oregonstate.edu\/psquared\/2009\/04\/07\/the-face-of-a-protein\/","title":{"rendered":"The face of a protein&#8230;"},"content":{"rendered":"<p>Hi all,<\/p>\n<p>I wanted to practice posting the image of a protein, so I looked for a protein with a name that might suggest a sense of humor. \u00a0I found Tubby&#8230; a very important protein involved in the development of the nervous system. \u00a0They have named a whole topology after &#8220;him&#8221;. \u00a0I oriented him using Protein Workshop so he sort of has a wink and a smile. \u00a0What do you think?<\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"alignnone size-full wp-image-97\" src=\"http:\/\/blogs.oregonstate.edu\/psquared\/files\/2009\/04\/tubby.jpeg\" alt=\"tubby\" width=\"429\" height=\"375\" srcset=\"https:\/\/osu-wams-blogs-uploads.s3.amazonaws.com\/blogs.dir\/150\/files\/2009\/04\/tubby.jpeg 536w, https:\/\/osu-wams-blogs-uploads.s3.amazonaws.com\/blogs.dir\/150\/files\/2009\/04\/tubby-300x262.jpg 300w\" sizes=\"auto, (max-width: 429px) 100vw, 429px\" \/><\/p>\n<p><a href=\"http:\/\/en.wikipedia.org\/wiki\/Tubby_protein\">Wikepedia reference<\/a><\/p>\n<p><a href=\"http:\/\/jcs.biologists.org\/cgi\/content\/full\/115\/1\/9\">Journal reference<\/a><\/p>\n<p>Tubby classification<\/p>\n<table border=\"0\" cellspacing=\"1\" cellpadding=\"1\" width=\"100%\">\n<tbody>\n<tr class=\"se_subitem1\">\n<td width=\"20%\">PDB ID<\/td>\n<td width=\"20%\">Class<\/td>\n<td width=\"20%\">Architecture<\/td>\n<td width=\"20%\">Topology<\/td>\n<\/tr>\n<tr>\n<td class=\"se_datasmall1\" width=\"20%\"><a href=\"http:\/\/www.rcsb.org\/pdb\/explore\/explore.do?structureId=1C8Z\">1c8z<\/a><\/td>\n<td class=\"se_datasmall1\" width=\"20%\"><a class=\"se_datasmall\" href=\"http:\/\/www.rcsb.org\/pdb\/search\/smartSubquery.do?smartSearchSubtype=TreeQuery&amp;t=12&amp;n=1657\">Alpha Beta<\/a><\/td>\n<td class=\"se_datasmall1\" width=\"20%\"><a class=\"se_datasmall\" href=\"http:\/\/www.rcsb.org\/pdb\/search\/smartSubquery.do?smartSearchSubtype=TreeQuery&amp;t=12&amp;n=1795\">Alpha-Beta Barrel<\/a><\/td>\n<td class=\"se_datasmall1\" width=\"20%\"><a class=\"se_datasmall\" href=\"http:\/\/www.rcsb.org\/pdb\/search\/smartSubquery.do?smartSearchSubtype=TreeQuery&amp;t=12&amp;n=1847\">Tubby Protein; Chain A<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p>PS  The color of the chain, running from blue toward red, corresponds to the direction of the sequence, from N-terminus toward C-terminus.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Hi all, I wanted to practice posting the image of a protein, so I looked for a protein with a name that might suggest a sense of humor. \u00a0I found Tubby&#8230; a very important protein involved in the development of &hellip; <a href=\"https:\/\/blogs.oregonstate.edu\/psquared\/2009\/04\/07\/the-face-of-a-protein\/\">Continue reading <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":196,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[4797],"tags":[],"class_list":["post-96","post","type-post","status-publish","format-standard","hentry","category-student-posts"],"_links":{"self":[{"href":"https:\/\/blogs.oregonstate.edu\/psquared\/wp-json\/wp\/v2\/posts\/96","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/blogs.oregonstate.edu\/psquared\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/blogs.oregonstate.edu\/psquared\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/blogs.oregonstate.edu\/psquared\/wp-json\/wp\/v2\/users\/196"}],"replies":[{"embeddable":true,"href":"https:\/\/blogs.oregonstate.edu\/psquared\/wp-json\/wp\/v2\/comments?post=96"}],"version-history":[{"count":6,"href":"https:\/\/blogs.oregonstate.edu\/psquared\/wp-json\/wp\/v2\/posts\/96\/revisions"}],"predecessor-version":[{"id":103,"href":"https:\/\/blogs.oregonstate.edu\/psquared\/wp-json\/wp\/v2\/posts\/96\/revisions\/103"}],"wp:attachment":[{"href":"https:\/\/blogs.oregonstate.edu\/psquared\/wp-json\/wp\/v2\/media?parent=96"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/blogs.oregonstate.edu\/psquared\/wp-json\/wp\/v2\/categories?post=96"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/blogs.oregonstate.edu\/psquared\/wp-json\/wp\/v2\/tags?post=96"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}