{"id":2311,"date":"2018-04-04T09:15:34","date_gmt":"2018-04-04T16:15:34","guid":{"rendered":"http:\/\/blogs.oregonstate.edu\/psquared\/?page_id=2311"},"modified":"2018-04-04T09:15:34","modified_gmt":"2018-04-04T16:15:34","slug":"syllabus-2018","status":"publish","type":"page","link":"https:\/\/blogs.oregonstate.edu\/psquared\/syllabus-2018\/","title":{"rendered":"Syllabus 2018"},"content":{"rendered":"<h2>Protein Portraits BB407H: Protein stories<\/h2>\n<h3>What the student can expect to learn:<\/h3>\n<p>We will tell protein stories\u00a0through three main activities.<\/p>\n<ul>\n<li><span style=\"text-decoration: underline\">Stories from the world of science.<\/span> Our\u00a0<em>first activity<\/em>\u00a0will be to take each other on story-telling tours of the chemistry and structure of proteins, guiding ourselves through the meanings and definitions of science by referring to the wealth of\u00a0materials that scientists commonly refer to in discussing protein molecules. \u00a0We will frequently turn\u00a0to the Protein Data Bank and the associated Molecule of the Month for examples of such stories. \u00a0We will make heavy use of the axiom that one good picture is worth a thousand words. \u00a0Our stories will therefore borrow illustrations wherever we can find them.\u00a0 For example, we may be guided by\u00a0two wonderfully illustrated science books,\u00a0\u00a0<span style=\"text-decoration: underline\">The Machinery of Life<\/span> by David Goodsell and\u00a0<span style=\"text-decoration: underline\">Introduction to Protein Structure<\/span>\u00a0by Branden and Tooze<\/li>\n<li><span style=\"text-decoration: underline\">Stories that include the perspective of art and speculative fiction.<\/span> The\u00a0<em>second activity<\/em>\u00a0will be to enhance our storytelling by employing our artistic instincts. \u00a0We will bring into our stories any and all forms of metaphor and hyperbole, characters and, settings, motives and plots. \u00a0We will\u00a0critique\u00a0existing examples from the small but limitless genre of\u00a0molecular science fiction (?). \u00a0We will share ideas and float trial balloons to\u00a0carry ourselves\u00a0to new levels\u00a0of scientifically- and artistically inspired storytelling.<\/li>\n<li><span style=\"text-decoration: underline\">Group authorship<\/span>. \u00a0In the\u00a0<em>third activity<\/em>\u00a0we will settle on a group composition that tells the story of a group of proteins. \u00a0Though vague at the outset, this mission will gain clarity as we work together. \u00a0To make the project more concrete, we will begin by inventing ourselves as five script writers tasked with the development an alternative ending to a world-famous science fiction film. \u00a0Take for example <em>2001 A Space Odyssey<\/em>. \u00a0What if the ending were changed such that a new beginning of life were to transpire? \u00a0We tell the story of how the characters and movement in the film bring molecules into play to set in motion a new beginning of life, seeded from elsewhere, carrying the message forward to new settings. \u00a0We will write sketches and drafts, storyboard the action, and watch where our creativity takes us.<\/li>\n<\/ul>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"alignleft size-medium wp-image-2314\" src=\"http:\/\/blogs.oregonstate.edu\/psquared\/files\/2018\/04\/Space-Odessey-Billboard-200x300.jpg\" alt=\"\" width=\"200\" height=\"300\" srcset=\"https:\/\/osu-wams-blogs-uploads.s3.amazonaws.com\/blogs.dir\/150\/files\/2018\/04\/Space-Odessey-Billboard-200x300.jpg 200w, https:\/\/osu-wams-blogs-uploads.s3.amazonaws.com\/blogs.dir\/150\/files\/2018\/04\/Space-Odessey-Billboard.jpg 300w\" sizes=\"auto, (max-width: 200px) 100vw, 200px\" \/><\/p>\n<h3>What is expected of the student:<\/h3>\n<ul>\n<li><span style=\"text-decoration: underline\">Classroom participation is number one.<\/span> \u00a0The best kind of participation stimulates discussion across the whole classroom. \u00a0If you are not talking, you are not participating. \u00a0But if\u00a0you are the only one talking, you are not promoting discussion and need to work on your listening skills! At minimum you should supply\u00a0a comment or question\u00a0each day of the class. \u00a0Jump in!<\/li>\n<li><span style=\"text-decoration: underline\">Progress reports.<\/span>\u00a0 We will set various deadlines for our project, and you are expected to describe your progress. \u00a0Willingness to share personal progress at all stages will lend a team atmosphere to the course. \u00a0That is what we are after.<\/li>\n<li><span style=\"text-decoration: underline\">Design deadlines<\/span> will be self-imposed. \u00a0We will distribute the work and stay realistically aware of the limited time that we can devote to this course. \u00a0Deadlines may include a) choosing a gene machine and offering a\u00a0preliminary story of how it operates by week three or four, and b) a fictionalized story due about two weeks later. That would bring us to the final half of the course when the group activity takes over. \u00a0The final deadline will be week ten, marked by publication of our scriptwriting.<\/li>\n<li><span style=\"text-decoration: underline\">Attendance<\/span>. \u00a0100% classroom attendance is expected\u00a0(aside from excused absences). Please\u00a0realize that your absences detrimentally affect the whole class, not simply you alone. \u00a0The easiest way to lower your letter grade is to miss class!<\/li>\n<\/ul>\n<h3>Grading<\/h3>\n<p>If a student comes to class, participates in our discussions, and meets each course deadline including the final deadline of producing a protein portrait artwork,\u00a0that effort will be a sufficiently strong performance to merit the receipt of an A letter grade in this 2-credit colloquium course.<\/p>\n<h3>Learning resources<\/h3>\n<ul>\n<li>We will make heavy use of the\u00a0<a href=\"http:\/\/www.pdb.org\/pdb\/home\/home.do\">Protein Data Bank<\/a>\u00a0and its\u00a0affiliated <a href=\"http:\/\/pdb101.rcsb.org\/motm\/motm-by-date\">Molecule of the Month<\/a>.<\/li>\n<li>The optional\u00a0textbook (for your purchase) is <span style=\"text-decoration: underline\">The Machinery of Life<\/span> by David Goodsell (2nd edition, 2009).<\/li>\n<\/ul>\n<p><a href=\"http:\/\/blogs.oregonstate.edu\/psquared\/files\/2015\/04\/The-Machinery-of-Life.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\" size-medium wp-image-1682 aligncenter\" src=\"http:\/\/blogs.oregonstate.edu\/psquared\/files\/2015\/04\/The-Machinery-of-Life-183x300.jpg\" alt=\"The Machinery of Life\" width=\"183\" height=\"300\" srcset=\"https:\/\/osu-wams-blogs-uploads.s3.amazonaws.com\/blogs.dir\/150\/files\/2015\/04\/The-Machinery-of-Life-183x300.jpg 183w, https:\/\/osu-wams-blogs-uploads.s3.amazonaws.com\/blogs.dir\/150\/files\/2015\/04\/The-Machinery-of-Life.jpg 211w\" sizes=\"auto, (max-width: 183px) 100vw, 183px\" \/><\/a><\/p>\n<ul>\n<li>Another optional book is\u00a0<span style=\"text-decoration: underline\">Introduction to Protein Structure<\/span>\u00a0by Branden and Tooze (Second edition; 1999; ISBN 0815323050; about $70.) \u00a0If you find a used copy, grab it! \u00a0This is a great book.<\/li>\n<\/ul>\n<p><img loading=\"lazy\" decoding=\"async\" class=\" size-medium wp-image-655 aligncenter\" src=\"http:\/\/blogs.oregonstate.edu\/psquared\/files\/2011\/03\/Brandon_Tooze3-226x300.jpg\" alt=\"\" width=\"226\" height=\"300\" srcset=\"https:\/\/osu-wams-blogs-uploads.s3.amazonaws.com\/blogs.dir\/150\/files\/2011\/03\/Brandon_Tooze3-226x300.jpg 226w, https:\/\/osu-wams-blogs-uploads.s3.amazonaws.com\/blogs.dir\/150\/files\/2011\/03\/Brandon_Tooze3.jpg 377w\" sizes=\"auto, (max-width: 226px) 100vw, 226px\" \/>.<\/p>\n<ul>\n<li>I am also happy to lend you a biochemistry textbook if that will help.<\/li>\n<\/ul>\n<h3>Cost of materials<\/h3>\n<p>Art materials for storyboarding purposes will probably cost you around $10- $20 at most (glue, tape, wire, other cheap materials). \u00a0Let&#8217;s hold down the cost. \u00a0Try to use the stuff you find lying around in the back of your closet. \u00a0Save money.<\/p>\n<h3><span style=\"color: #888888\">Phil McFadden<\/span><\/h3>\n<p><span style=\"color: #ffffff\">Phil McFadden<\/span><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Protein Portraits BB407H: Protein stories What the student can expect to learn: We will tell protein stories\u00a0through three main activities. Stories from the world of science. Our\u00a0first activity\u00a0will be to take each other on story-telling tours of the chemistry and &hellip; <a href=\"https:\/\/blogs.oregonstate.edu\/psquared\/syllabus-2018\/\">Continue reading <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":196,"featured_media":0,"parent":0,"menu_order":101,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-2311","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/blogs.oregonstate.edu\/psquared\/wp-json\/wp\/v2\/pages\/2311","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/blogs.oregonstate.edu\/psquared\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/blogs.oregonstate.edu\/psquared\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/blogs.oregonstate.edu\/psquared\/wp-json\/wp\/v2\/users\/196"}],"replies":[{"embeddable":true,"href":"https:\/\/blogs.oregonstate.edu\/psquared\/wp-json\/wp\/v2\/comments?post=2311"}],"version-history":[{"count":4,"href":"https:\/\/blogs.oregonstate.edu\/psquared\/wp-json\/wp\/v2\/pages\/2311\/revisions"}],"predecessor-version":[{"id":2316,"href":"https:\/\/blogs.oregonstate.edu\/psquared\/wp-json\/wp\/v2\/pages\/2311\/revisions\/2316"}],"wp:attachment":[{"href":"https:\/\/blogs.oregonstate.edu\/psquared\/wp-json\/wp\/v2\/media?parent=2311"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}