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The Jones Lab

Plant Ecology and Evolutionary Biology

Selected Publications

October 26th, 2012

See full publication list in google scholar

Finch, K, E Espinoza, FA Jones, R Cronn. Navigating a random forest: Source identification of western Oregon Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco) wood cores via Direct Analysis in Real Time (Time of Flight) Mass Spectrometry. 2017, Applications in Plant Sciences.

 Swenson, NG and FA Jones. 2017 Community transcriptomics, genomics, and the problem of species co-occurrence. Journal of Ecology, 105: 563 – 568.

Schappe, T, F Albornoz, AS Neat, R Condit, BL Tuner, FA Jones. 2017. The role of soil chemistry and plant neighborhoods in structuring fungal communities in three Panamanian rainforests. Journal of Ecology, 105: 569 – 579.

Celis, J, CB Halpern, and FA Jones. Intraspecific trait variation and the differential decline of meadow species during conifer encroachment. 2017. Journal of Plant Ecology.

Zalamea, P, BL Turner,K Winter, FA Jones, C Sarmiento and JW Dalling 2016. Seedling growth responses responses to phosphorus distribution patterns of tropical trees. New Phytologist

Barberán, A, KL McGuire, JA Wolf, FA Jones, SJ Wright, BL Turner, A Essene, SP Hubbell, B. Faircloth, N Fierer. 2015. Relating belowground microbial composition to the taxonomic, phylogenetic, and functional trait distributions of trees in a tropical forest. Ecology Letters

Erickson DL FA Jones, et al. 2014. Comparative evolutionary diversity and phylogenetic structure across multiple forest dynamics plots: a mega-phylogeny approach. Frontiers in Genetics. 5:00358.

Pearse, WD, FA Jones, and A Purvis. 2013. Barro Colorado Island’s phylogenetic assemblage structure across fine spatial scales and among clades of different ages.  Ecology. 94: 2861-2872.

McInnes, L, FA Jones, CDL Orme, B Sobkowiak, R Govaerts, TG Barraclough, MW Chase, N Hassan, DE Soltis, PS Soltis, and V Savolainen.. 2013. Do global diversity patterns of vertebrates reflect those of monocots?  PLoS ONE 8(5): e56979. doi:10.1371/journal.pone.0056979

 Jones, FA I Ceron-Souza, BD Hardesty, and CW Dick. 2013.  Genetic evidence of Quaternary demographic changes in four rainforest tree species sampled across the Isthmus of Panama.  Journal of Biogeography, 40: 720-731.

Ivania Cerón-Souza, Eldredge Bermingham, William Owen McMillan and FA Jones  2012. Comparative genetic structure of two mangrove species in Caribbean and Pacific estuaries of Panama. BMC Evolutionary Biology, 12:205. DOI: 10.1186/1471-2148-12-205

Jones, FA, DL Erickson, MA Bernal, WJ Kress, EA Herre, H Muller-Landau, O Sanjur, E Bermingham, and BL Turner 2011. The roots of diversity: below ground species overlap in a tropical forest revealed by DNA barcoding and inverse modeling of root distributions.PLoS ONE, 6, e24506.

Jones, FA 2010.  Reconciling field observations of dispersal with estimates of gene flow.  Molecular Ecology, 19, 4379-4382.

Jones, FA and LS Comita 2010.  Density-dependent predispersal seed predation and fruit set in a tropical tree.  Oikos, 119, 1841-1847.

Kress, WJ, DL Erickson, FA Jones, N Swenson, R Perez, O Sanjur, and E Bermingham 2009.  Plant DNA barcodes and a community phylogeny of a tropical forest dynamics plot in Panama.  Proceedings of the National Academy of Sciences, 106, 18627-18632.

Jones, FA and LS Comita 2008. Neighbourhood density and genetic relatedness interact to determine fruit set and abortion rates in a continuous tropical tree population. Proceedings of the Royal Society of London Series B, 275, 2759-2767.

SJ Wright, A Trakhtenbrot, G Boher, M Detto, N Horvitz, GG Kabul, HC Muller-Landau, FA Jones, and R Nathan 2008.  Understanding strategies for seed dispersal by wind under contrasting atmospheric conditions.  Proceedings of the National Academy of Sciences 105, 19084-19089.

Jones, FA and HC Muller-Landau 2008.  Measuring long distance seed dispersal in complex natural environments: an evaluation and integration of classical and genetic methods.  Journal of Ecology 96, 642-652.

Dick, CW, OJ Hardy, FA Jones, and RJ Petit 2008.  Spatial scales of pollen and seed-mediated gene dispersal in tropical forest trees.  Tropical Plant Biology, 1, 20-33

Jones, FA and SP Hubbell 2006.  Demographic spatial genetic structure of the neotropical tree, Jacaranda copaiaMolecular Ecology, 15, 3205-3217.

Jones, FA, JL Hamrick, CJ Peterson, and ER Squiers 2006.  Inferring colonization history from analyses of spatial genetic structure within populations of Pinus strobus and Quercus rubra. Molecular Ecology, 15, 851-861.

Jones, FA, J Chen, G-J Weng, and SP Hubbell 2005.  A genetic evaluation of seed dispersal in the Neotropical tree, Jacaranda copaia (Bignoniaceae).  The American Naturalist, 166, 843-855

 

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  • About Andy Jones

    • Andy Jones is an Assistant Professor in the Botany and Plant Pathology Department at Oregon State University. He has broad interests in the ecological and evolutionary mechanisms responsible for the origin and maintenance of plant diversity.

        Dr. Jones is a Research Associate at the Smithsonian Tropical Research Institute.