The Recipe for a “Perfect” Marine Mammal and Seabird Cruise

By Alexa Kownacki, Ph.D. Student, OSU Department of Fisheries and Wildlife, Geospatial Ecology of Marine Megafauna Lab

Science—and fieldwork in particular—is known for its failures. There are websites, blogs, and Twitter pages dedicated to them. This is why, when things go according to plan, I rejoice. When they go even better than expected, I practically tear up from amazement. There is no perfect recipe for a great marine mammal and seabird research cruise, but I would suggest that one would look like this:

 A Great Marine Mammal and Seabird Research Cruise Recipe:

  • A heavy pour of fantastic weather
    • Light on the wind and seas
    • Light on the glare
  • Equal parts amazing crew and good communication
  • A splash of positivity
  • A dash of luck
  • A pinch of delicious food
  • Heaps of marine mammal and seabird sightings
  • Heat to approximately 55-80 degrees F and transit for 10 days along transects at 10-12 knots
The end of another beautiful day at sea on the R/V Shimada. Image source: Alexa K.

The Northern California Current Ecosystem (NCCE) is a highly productive area that is home to a wide variety of cetacean species. Many cetaceans are indicator species of ecosystem health as they consume large quantities of prey from different levels in trophic webs and inhabit diverse areas—from deep-diving beaked whales to gray whales traveling thousands of miles along the eastern north Pacific Ocean. Because cetacean surveys are a predominant survey method in large bodies of water, they can be extremely costly. One alternative to dedicated cetacean surveys is using other research vessels as research platforms and effort becomes transect-based and opportunistic—with less flexibility to deviate from predetermined transects. This decreases expenses, creates collaborative research opportunities, and reduces interference in animal behavior as they are never pursued. Observing animals from large, motorized, research vessels (>100ft) at a steady, significant speed (>10kts/hour), provides a baseline for future, joint research efforts. The NCCE is regularly surveyed by government agencies and institutions on transects that have been repeated nearly every season for decades. This historical data provides critical context for environmental and oceanographic dynamics that impact large ecosystems with commercial and recreational implications.

My research cruise took place aboard the 208.5-foot R/V Bell M. Shimada in the first two weeks of May. The cruise was designated for monitoring the NCCE with the additional position of a marine mammal observer. The established guidelines did not allow for deviation from the predetermined transects. Therefore, mammals were surveyed along preset transects. The ship left port in San Francisco, CA and traveled as far north as Cape Meares, OR. The transects ranged from one nautical mile from shore and two hundred miles offshore. Observations occurred during “on effort” which was defined as when the ship was in transit and moving at a speed above 8 knots per hour dependent upon sea state and visibility. All observations took place on the flybridge during conducive weather conditions and in the bridge (one deck below the flybridge) when excessive precipitation was present. The starboard forward quarter: zero to ninety degrees was surveyed—based on the ship’s direction (with the bow at zero degrees). Both naked eye and 7×50 binoculars were used with at least 30 percent of time binoculars in use. To decrease observer fatigue, which could result in fewer detected sightings, the observer (me) rotated on a 40 minutes “on effort”, 20 minutes “off effort” cycle during long transits (>90 minutes).

Alexa on-effort using binoculars to estimate the distance and bearing of a marine mammal sighted off the starboard bow. Image source: Alexa K.

Data was collected using modifications to the SEEbird Wincruz computer program on a ruggedized laptop and a GPS unit was attached. At the beginning of each day and upon changes in conditions, the ship’s heading, weather conditions, visibility, cloud cover, swell height, swell direction, and Beaufort sea state (BSS) were recorded. Once the BSS or visibility was worse than a “5” (1 is “perfect” and 5 is “very poor”) observations ceased until there was improvement in weather. When a marine mammal was sighted the latitude and longitude were recorded with the exact time stamp. Then, I noted how the animal was sighted—either with binoculars or naked eye—and what action was originally noticed—blow, splash, bird, etc. The bearing and distance were noted using binoculars. The animal was given three generalized behavior categories: traveling, feeding, or milling. A sighting was defined as any marine mammal or group of animals. Therefore, a single sighting would have the species and the best, high, and low estimates for group size.

By my definitions, I had the research cruise of my dreams. There were moments when I imagined people joining this trip as a vacation. I *almost* felt guilty. Then, I remember that after watching water for almost 14 hours (thanks to the amazing weather conditions), I worked on data and reports and class work until midnight. That’s the part that no one talks about: the data. Fieldwork is about collecting data. It’s both what I live for and what makes me nervous. The amount of time, effort, and money that is poured into fieldwork is enormous. The acquisition of the data is not as simple as it seems. When I briefly described my position on this research cruise to friends, they interpret it to be something akin to whale-watching. To some extent, this is true. But largely, it’s grueling hours that leave you fatigued. The differences between fieldwork and what I’ll refer to as “everything else” AKA data analysis, proposal writing, manuscript writing, literature reviewing, lab work, and classwork, are the unbroken smile, the vaguely tanned skin, the hours of laughter, the sea spray, and the magical moments that reassure me that I’ve chosen the correct career path.

Alexa photographing a gray whale at sunset near Newport, OR. Image source: Alexa K.

This cruise was the second leg of the Northern California Current Ecosystem (NCCE) survey, I was the sole Marine Mammal and Seabird Observer—a coveted position. Every morning, I would wake up at 0530hrs, grab some breakfast, and climb to the highest deck: the fly-bridge. Akin to being on the top of the world, the fly-bridge has the best views for the widest span. From 0600hrs to 2000hrs I sat, stood, or danced in a one-meter by one-meter corner of the fly-bridge and surveyed. This visual is why people think I’m whale watching. In reality, I am constantly busy. Nonetheless, I had weather and seas that scientists dream about—and for 10 days! To contrast my luck, you can read Florence’s blog about her cruise. On these same transects, in February, Florence experienced 20-foot seas with heavy rain with very few marine mammal sightings—and of those, the only cetaceans she observed were gray whales close to shore. That starkly contrasts my 10 cetacean species with upwards of 45 sightings and my 20-minute hammock power naps on the fly-bridge under the warm sun.

Pacific white-sided dolphins traveling nearby. Image source: Alexa K.

Marine mammal sightings from this cruise included 10 cetacean species: Pacific white-sided dolphin, Dall’s porpoise, unidentified beaked whale, Cuvier’s beaked whale, gray whale, Minke whale, fin whale, Northern right whale dolphin, blue whale, humpback whale, and transient killer whale and one pinniped species: northern fur seal. What better way to illustrate these sightings than with a map? We are a geospatial lab after all.

Cetacean Sightings on the NCCE Cruise in May 2018. Image source: Alexa K.

This map is the result of data collection. However, it does not capture everything that was observed: sea state, weather, ocean conditions, bathymetry, nutrient levels, etc. There are many variables that can be added to maps–like this one (thanks to my GIS classes I can start adding layers!)–that can provide a better understanding of the ecosystem, predator-prey dynamics, animal behavior, and population health.

The catch from a bottom trawl at a station with some fish and a lot of pyrosomes (pink tube-like creatures). Image source: Alexa K.

Being a Ph.D. student can be physically and mentally demanding. So, when I was offered the opportunity to hone my data collection skills, I leapt for it. I’m happiest in the field: the wind in my face, the sunshine on my back, surrounded by cetaceans, and filled with the knowledge that I’m following my passion—and that this data is contributing to the greater scientific community.

Humpback whale photographed traveling southbound. Image source: Alexa K.

“The joy of paper acceptance” or “The GEMM Lab’s recent scientific contributions”

Dr. Leigh Torres, Geospatial Ecology of Marine Megafauna Lab, Marine Mammal Institute, Oregon State University

The GEMM Lab is always active – running field projects, leading outreach events, giving seminars, hosting conferences, analyzing data, mentoring young scientists, oh the list goes on! (Yes, I am a proud lab PI). And, recently we have had a flurry of scientific papers either published or accepted for publication that I want to highlight. These are all great pieces of work that demonstrate our quality work, poignant and applied science, and strong collaborations. For each paper listed below I provide a short explanation of the study and implications. (Those names underlined are GEMM Lab members, and I provided a weblink where available.)


Sullivan, F.A. & Torres, L.G. Assessment of vessel disturbance to gray whales to inform sustainable ecotourism. The Journal of Wildlife Management, doi:10.1002/jwmg.21462.

This project integrated research and outreach regarding gray whale behavioral response to vessels. We simultaneously tracked whales and vessels, and data analysis showed significant differences in gray whale activity budgets when vessels were nearby. Working with stakeholders, we translated these results into community-developed vessel operation guidelines and an informational brochure to help mitigate impacts on whales.


Hann, C., Stelle, L., Szabo, A. & Torres, L. (2018) Obstacles and Opportunities of Using a Mobile App for Marine Mammal Research. ISPRS International Journal of Geo-Information, 7, 169.

This study demonstrates the strengths (fast and cheap data collection) and weaknesses (spatially biased data) of marine mammal data collected using the mobile app Whale mAPP. We emphasize the need for increased citizen science participation to overcome obstacles, which will enable this data collection method to achieve its great potential.


Barlow, D.R., Torres, L.G., Hodge, K., Steel, D., Baker, C.S., Chandler, T.E., Bott, N., Constantine, R., Double, M.C., Gill, P.C., Glasgow, D., Hamner, R.M., Lilley, C., Ogle, M., Olson, P.A., Peters, C., Stockin, K.A., Tessaglia-Hymes, C.T. & Klinck, H. (in press) Documentation of a New Zealand blue whale population based on multiple lines of evidence. Endangered Species Research.

This study used genetics, acoustics, and photo-id to document a new population of blue whales around New Zealand that is genetically isolated, has high year-round residence, and shows limited connectivity to other blue whale populations. This discovery has important implication for population management, especially in the South Taranaki Bight region of New Zealand where the whales forage among industrial activity.


Burnett, J.D., Lemos, L., Barlow, D.R., Wing, M.G., Chandler, T.E. & Torres, L.G. (in press) Estimating morphometric attributes of baleen whales with photogrammetry from small UAS: A case study with blue and gray whales. Marine Mammal Science.

Here we developed methods to measure whale body morphometrics using images captured via Unmanned Aerial Systems (UAS; ‘drones’). The paper presents three freely available analysis programs and a protocol to help the community standardize methods, assess and minimize error, and compare data between studies.


Holdman, A.K., Haxel, J.H., Klinck, H. & Torres, L.G. (in press) Acoustic monitoring reveals the times and tides of harbor porpoise distribution off central Oregon, USA. Marine Mammal Science.

Right off the Newport, Oregon harbor entrance we listened for harbor porpoises at two locations using hydrophones. We found that porpoise presence at the shallow rocky reef site corresponds with the ebb tidal phase, while harbor porpoise presence at the deeper site with sandy bottom was associated with night-time foraging. It appears that harbor porpoise change their spatial and temporal patterns of habitat use to increase their foraging efficiency.


Derville, S., Torres, L.G., Iovan, C. & Garrigue, C. (in press) Finding the right fit: Comparative cetacean distribution models using multiple data sources. Diversity and Distributions.

Species distribution models (SDM) are used widely to understand the drivers of cetacean distribution patterns, and to predict their space-use patterns too. Using humpback whale sighting datasets in New Caledonia, this study explores the performance of different SDM algorithms (GAM, BRT, MAXENT,  GLM, SVM) and methods of modeling presence-only data. We highlight the importance of controlling for model overfitting and thorough model validation.


Bishop, A.M., Brown, C., Rehberg, M., Torres, L.G. & Horning, M. (in press) Juvenile Steller sea lion (Eumetopias jubatus) utilization distributions in the Gulf of Alaska. Movement Ecology.

This study examines the distribution patterns of juvenile Steller sea lions in the Gulf of Alaska to gain a better understanding of the habitat needs of this vulnerable demographic group within a threatened population. Utilization distributions were derived for 84 tagged sea lions, which showed sex, seasonal and spatial differences. This information will support the development of a species recovery plan.

This comic seemed appropriate here. Thanks for everyone’s hard work!

Some advice on how to navigate the scientific publication maze

Dr. Leigh Torres, Geospatial Ecology of Marine Megafauna Lab, Marine Mammal Institute, Oregon State University

Publication of our science in peer-reviewed journals is an extremely important part of our lives as scientists. It’s how we communicate our work, check each other’s work, and improve, develop and grow our scientific fields. So when our manuscript is finally written with great content, we could use some instructions for how to get it through the publication process.  Who gets authorship? How do I respond to reviewers? Who pays for publication costs?

There is some good advice online about manuscript preparation and selecting the right journal. But there is no blueprint for manuscript preparation. That’s because it’s a complicated and variable process to navigate, even when you’ve done it many times. Every paper is different. Every journal has different content and format requirements. And every authorship list is different, with different expectations. As an academic supervisor of many graduate students, and as author on many peer-reviewed papers, I have seen or been a part of more than a few publication blunders, hiccups, road-blocks, and challenges.

Recently I’ve had students puzzle over the nuances of the publication process: “I had no idea that was my role as lead author!”, “How do I tell a reviewer he’s wrong?”, “Who should I recommend as reviewers?” So, I have put together some advice about how to navigate through a few of the more common pitfalls and questions of the scientific publication process. I’m not going to focus on manuscript content, structure, or journal choice – that advice is elsewhere and for authors to evaluate. My intent here is to discuss some of the ‘unwritten’ topics and expectations of the publication process. This guidance and musings are based my 20 years of experience as a scientist trying to navigate the peer-review publication maze myself. I encourage others to add their advice and comments below based on their experiences so that we can engage as a community in an open dialog about these topics, and add transparency to an already difficult and grueling, albeit necessary, process.

Image Credit: Nick at


Authorship: Deciding who should – and shouldn’t be – be a co-author on a paper is often a challenging, sensitive, and angst-filled experience. Broad collaboration is so common and often necessary today that we often see very long author lists on papers. It’s best to be inclusive and recognize contribution where it is deserved, but we also don’t want to be handing out co-authorship as a token of appreciation or just to pad someone’s CV or boost their H-index. Indeed, journals don’t want that, and we don’t want to promote that trend. Sometimes it is more appropriate to recognize someone’s contribution in the acknowledgements section.

The best advice I can give about how to determine authorship is advice that was given to me by my graduate advisor, Dr. Andy Read at Duke University: To deserve authorship the person must have contributed to at least three of these five areas: concept development, acquisition of funding, data collection, data analysis, manuscript writing. Of course, this rule is not hard and fast, and thoughtful judgement and discussions are needed. Often someone has contributed to only one or two of these areas, but in such a significant manner that authorship is warranted.

I have also seen situations where someone has contributed only a small, but important, piece of data. What happens then? My gut feeling is this should be an acknowledgment, especially if it’s been published previously, but sometimes the person is recognized as a co-author to ensure inclusion of the data. Is this right? That’s up to you and your supervisor(s), and is often case-specific. But I do think we need to limit authorship-inflation. Some scientists in this situation will gracefully turn down co-authorship and ask only for acknowledgement, while others will demand co-authorship when it’s not fully deserved. This is the authorship jungle we all must navigate, which does not get easier with time or experience. So, it’s best to just accept the complexity and make the best decisions we can based on the science, not necessarily the scientists.

Next, there is the decision of author order, which can be another challenging decision. A student with the largest role in data collection/analysis and writing, will often be the lead author, especially if the paper is also forming a chapter of his/her thesis. But, if lead authorship is not clear (maybe the student’s work focuses on a small part of a much larger project) then its best to discuss authorship order with co-authors sooner rather than later. The lead author should be the person with the largest role in making the study happen, but often a senior scientist, like an academic supervisor, will have established the project and gained the funding support independent of a student’s involvement. This ‘senior scientist’ role is frequently recognized by being listed last in the authorship list – a trend that has developed in the last ~15 years. Or the senior scientists will be the corresponding author. The order of authors in between the first and last author is often grey, muddled and confusing. To sort this order out, I often think about who else had a major role in the project, and list them near the front end, after the lead author. And then after that, it is usually just based on alphabetical order; you can often see this trend when you look at long author lists.

Responsibility as lead author:  The role of a lead author is to ‘herd the cats’. Unless otherwise specified by co-authors/supervisor, this process includes formatting the manuscript as per journal specifications, correspondence with journal editors (letters to editors and response to reviewer comments), correspondence with co-authors, consideration and integration of all co-author comments and edits into the manuscript, manuscript revisions, staying on time with re-submissions to the journal, finding funding for publication costs, and review of final proofs before publication. Phew! Lots to do. To help you through this process, here are some tips:

How to get edits back from co-authors: When you send out the manuscript for edits/comments, give your co-authors a deadline. This deadline should be at least 2 weeks out, but best to give more time if you can. Schedules are so packed these days. And, say in the email something like, ‘If I don’t hear back from you by such and such a date I’ll assume you are happy with the manuscript as is.” This statement often spurs authors to respond.

How to respond to reviewer comments: Always be polite and grateful, even when you completely disagree with the comment or feel the reviewer has not understood your work. Phrases like “we appreciate the feedback”, “we have considered the comment”, and “the reviewers provided thoughtful criticism” are good ways to show appreciation for reviewer comments, even when it’s followed by a ‘but’ statement. When revising a manuscript, you do not need to incorporate all reviewer comments, but you do need to go through each comment one-by-one and say “yes, thanks for this point. We have now done that,” or thoughtfully explain why you have not accepted the reviewer advice.

While receiving negative criticism about your work is hard, I have found that the advice is often right and helpful in the long run. When I first receive reviewer comments back on a manuscript, especially if it is a rejection – yes, this happens, and it sucks – I usually read through it all. Fume a bit. And then put it aside for a week or so. This gives me time to process and think about the feedback. By the time I come back to it, my emotional response has subsided and I can appreciate the critical comments with objectivity.

Journal formatting can be a nightmare: Some editor may read this post and hate me, but my advice is don’t worry too much about formatting a manuscript perfectly to journal specs. During the initial manuscript submission, reviewers will be assessing content, not how well you match the journal’s formatting. So don’t kill yourself at this stage to get everything perfect, although you should be close. Once your paper gets through the first round of reviews, then you should worry about formatting perfectly in the revision.

Who should I recommend as a reviewer? Editors like it when you make their lives easier by recommending appropriate reviewers for your manuscript. Obviously you should not recommend close friends or colleagues. Giving useful, appropriate reviewer suggestions can be challenging. My best advice for this step is to look at the authors you have referenced in the manuscript. Those authors referenced multiple times may have interest in your work, and be related to the subject matter.

Who pays or how to pay for publication? Discuss this issue with your co-authors/supervisor and plan ahead. Most journals have publication fees that often range between $1000 and $2000. Sometimes color figures cost more. And, if you want your paper to be open access, plan on paying > $3000. So, when deciding on a journal, keep these costs in mind if you are on a limited budget. These days I add at least $2000 to almost every project budget to pay for publication costs. Publication is expensive, which is ridiculous considering we as scientists provide the content, review the content for free, and then often have to pay for the papers once published. But that’s the frustrating, unbalanced racket of scientific publication today – a topic for another time, but this article is definitely worth a read, if interested.

So that’s it from me. Please add your advice, feedback, and thoughts below in the comments section.

The Land of Maps and Charts: Geospatial Ecology

By Alexa Kownacki, Ph.D. Student, OSU Department of Fisheries and Wildlife, Geospatial Ecology of Marine Megafauna Lab

I love maps. I love charts. As a random bit of trivia, there is a difference between a map and a chart. A map is a visual representation of land that may include details like topology, whereas a chart refers to nautical information such as water depth, shoreline, tides, and obstructions.

Map of San Diego, CA, USA. (Source: San Diego Metropolitan Transit System)
Chart of San Diego, CA, USA. (Source: NOAA)

I have an intense affinity for visually displaying information. As a child, my dad traveled constantly, from Barrow, Alaska to Istanbul, Turkey. Immediately upon his return, I would grab our standing globe from the dining room and our stack of atlases from the coffee table. I would sit at the kitchen table, enthralled at the stories of his travels. Yet, a story was only great when I could picture it for myself. (I should remind you, this was the early 1990s, GoogleMaps wasn’t a thing.) Our kitchen table transformed into a scene from Master and Commander—except, instead of nautical charts and compasses, we had an atlas the size of an overgrown toddler and salt and pepper shakers to pinpoint locations. I now had the world at my fingertips. My dad would show me the paths he took from our home to his various destinations and tell me about the topography, the demographics, the population, the terrain type—all attribute features that could be included in common-day geographic information systems (GIS).

Uncle Brian showing Alexa where they were on a map of Maui, Hawaii, USA. (Photo: Susan K. circa 1995)

As I got older, the kitchen table slowly began to resemble what I imagine the set from Master and Commander actually looked like; nautical charts, tide tables, and wind predictions were piled high and the salt and pepper shakers were replaced with pencil marks indicating potential routes for us to travel via sailboat. The two of us were in our element. Surrounded by visual and graphical representations of geographic and spatial information: maps. To put my map-attraction this in even more context, this is a scientist who grew up playing “Take-Off”, a board game that was “designed to teach geography” and involved flying your fleet of planes across a Mercator projection-style mapboard. Now, it’s no wonder that I’m a graduate student in a lab that focuses on the geospatial aspects of ecology.

A precocious 3-year-old Alexa, sitting with the airplane pilot asking him a long list of travel-related questions (and taking his captain’s hat). Photo: Susan K.

So why and how did geospatial ecology became a field—and a predominant one at that? It wasn’t that one day a lightbulb went off and a statistician decided to draw out the results. It was a progression, built upon for thousands of years. There are maps dating back to 2300 B.C. on Babylonian clay tablets (The British Museum), and yet, some of the maps we make today require highly sophisticated technology. Geospatial analysis is dynamic. It’s evolving. Today I’m using ArcGIS software to interpolate mass amounts of publicly-available sea surface temperature satellite data from 1981-2015, which I will overlay with a layer of bottlenose dolphin sightings during the same time period for comparison. Tomorrow, there might be a new version of software that allows me to animate these data. Heck, it might already exist and I’m not aware of it. This growth is the beauty of this field. Geospatial ecology is made for us cartophiles (map-lovers) who study the interdependency of biological systems where location and distance between things matters.

Alexa’s grandmother showing Alexa (a very young cartographer) how to color in the lines. Source: Susan K. circa 1994

In a broader context, geospatial ecology communicates our science to all of you. If I posted a bunch of statistical outputs in text or even table form, your eyes might glaze over…and so might mine. But, if I displayed that same underlying data and results on a beautiful map with color-coded symbology, a legend, a compass rose, and a scale bar, you might have this great “ah-ha!” moment. That is my goal. That is what geospatial ecology is to me. It’s a way to SHOW my science, rather than TELL it.

Would you like to see this over and over again…?

A VERY small glimpse into the enormous amount of data that went into this map. This screenshot gave me one point of temperature data for a single location for a single day…Source: Alexa K.

Or see this once…?

Map made in ArcGIS of Coastal common bottlenose dolphin sightings between 1981-1989 with a layer of average sea surface temperatures interpolated across those same years. A picture really is worth a thousand words…or at least a thousand data points…Source: Alexa K.

For many, maps are visually easy to interpret, allowing quick message communication. Yet, there are many different learning styles. From my personal story, I think it’s relatively obvious that I’m, at least partially, a visual learner. When I was in primary school, I would read the directions thoroughly, but only truly absorb the material once the teacher showed me an example. Set up an experiment? Sure, I’ll read the lab report, but I’m going to refer to the diagrams of the set-up constantly. To this day, I always ask for an example. Teach me a new game? Let’s play the first round and then I’ll pick it up. It’s how I learned to sail. My dad described every part of the sailboat in detail and all I heard was words. Then, my dad showed me how to sail, and it came naturally. It’s only as an adult that I know what “that blue line thingy” is called. Geospatial ecology is how I SEE my research. It makes sense to me. And, hopefully, it makes sense to some of you!

Alexa’s dad teaching her how to sail. (Source: Susan K. circa 2000)
Alexa’s first solo sailboat race in Coronado, San Diego, CA. Notice: Alexa’s dad pushing the bow off the dock and the look on Alexa’s face. (Source: Susan K. circa 2000)
Alexa mapping data using ArcGIS in the Oregon State University Library. (Source: Alexa K circa a few minutes prior to posting).

I strongly believe a meaningful career allows you to highlight your passions and personal strengths. For me, that means photography, all things nautical, the great outdoors, wildlife conservation, and maps/charts.  If I converted that into an equation, I think this is a likely result:

Photography + Nautical + Outdoors + Wildlife Conservation + Maps/Charts = Geospatial Ecology of Marine Megafauna

Or, better yet:

📸 + ⚓ + 🏞 + 🐋 + 🗺 =  GEMM Lab

This lab was my solution all along. As part of my research on common bottlenose dolphins, I work on a small inflatable boat off the coast of California (nautical ✅, outdoors ✅), photograph their dorsal fin (photography ✅), and communicate my data using informative maps that will hopefully bring positive change to the marine environment (maps/charts ✅, wildlife conservation✅). Geospatial ecology allows me to participate in research that I deeply enjoy and hopefully, will make the world a little bit of a better place. Oh, and make maps.

Alexa in the field, putting all those years of sailing and chart-reading to use! (Source: Leila L.)


Living the Dream – life as a marine mammal observer

By Florence Sullivan, MSc.

Living the dream as a marine mammal observer onboard the R/V Bell Shimada Photo credit: Dave Jacobsen

I first learned that “Marine Mammal Observer” was a legitimate career field during the summer after my junior year at the University of Washington.  I had the good fortune to volunteer for the BASIS fisheries-oceanography survey onboard the R/V Oscar Dyson where I met two wonderful bird observers who taught me how to identify various pelagic bird species and clued me in to just how diverse the marine science job market can be. After the cruise, younger Florence went off with an expanded world view and a small dream that maybe someday she could go out to sea and survey for marine mammals on a regular basis (and get paid for it?!).  Eight years later, I am happy to report that I have just spent the last week as the marine mammal observer on the North California Current Survey on the Dyson’s sister ship, the R/V Bell M. Shimada.  While we may not have seen as many marine mammals as I would have liked, the experience has still been everything younger Florence hoped it would be.

Finally leaving port a few days behind schedule due to stormy weather! photo credit: Florence Sullivan

If you’ve ever wondered why the scientists in your life may refer to summer as “field work season”, it’s because attempting to do research outside in the winter is an exercise in frustration, troubleshooting, and flexibility. Case in point; this cruise was supposed to sail away from port on the 24th of February, but did not end up leaving until the 27th due to bad weather.  This weather delay meant that we had to cut some oceanographic stations we would like to have sampled, and even when we made it out of the harbor, the rough weather made it impossible to sample some of the stations we still had left on our map.  That being said, we still got a lot of good work done!

The original station map. The warm colors are the west coast of the US, the cold colors are the ocean, and the black dots are planned survey stations

The oceanographers were able to conduct CTD casts at most planned stations, as well as sample the water column with a vertical zooplankton net, a HAB net (for looking for the organisms that cause Harmful Algal Blooms),  and a Bongo Net (a net that specializes in getting horizontal samples of the water column).  When it wasn’t too windy, they were also able to sample with the Manta net (a net specialized for surface sampling – it looks like a manta ray’s mouth) and at certain near-shore stations they did manage to get some bottom beam trawls in to look at the benthic community of fishes and invertebrates.  All this was done while dodging multitudes of crab pots and storm fronts.  The NOAA corps officers who drive the boat, and the deck crew who handle all the equipment deployments and retrievals really did their utmost to make sure we were able to work.

Stormy seas make for difficult sampling conditions! photo credit: Florence Sullivan

For my part, I spent the hours between stations searching the wind-tossed waves for any sign of marine mammals. Over the course of the week, I saw a few Northern fur seals, half a dozen gray whales, and a couple of unidentified large cetaceans.  When you think about the productivity of the North Pacific Ecosystem this may not seem like very much.  But remember, it is late winter, and I do not have x-ray vision to see through the waves.  It is likely that I missed a number of animals simply because the swell was too large, and when we calculate our “detection probability” these weather factors will be taken into account. In addition, many of our local marine mammals are migrators who might be in warmer climates, or are off chasing different food sources at the moment.  In ecology, when you want to know how a population of animals is distributed across a land- or sea-scape, it is just as important to understand where the animals are NOT as where they ARE. So all of this “empty” water was very important to survey simply because it helps us refine our understanding of where animals don’t want to be.  When we know where animals AREN’T we can ask better questions about why they occur where they ARE.

Black Footed Albatross soars near the boat. Photo credit: Florence Sullivan

Notable species of the week aside from the marine mammals include Laysan and Black Footed Albatrosses, a host of Vellella vellella (sailor by the wind hydroid colonies) and the perennial favorite of oceanographers; the shrinking Styrofoam cup.  (See pictures)

We sent these styrofoam cups down to 1800 meters depth. The pressure at those depths causes all the air to escape from the styrofoam, and it shrinks! This is a favorite activity of oceanographers to demonstrate the effects on increased pressure!

These sorts of interdisciplinary cruises are quite fun and informative to participate in because we can build a better picture of the ecosystem as a whole when we use a multitude of methods to explore it.  This strength of cooperation makes me proud to add my little piece to the puzzle. As I move forward in life, whether I get to be the marine mammal observer, the oceanographer, or perhaps an educator, I will always be glad to contribute to collaborative research.


Grad School: Nothing Lasts, Nothing is Perfect, Nothing is Finished.

By Florence Sullivan, MSc

Last week, I attended the Seattle Garden Show with my mom and a friend of hers.  We particularly enjoyed the West Seattle Nursery’s entry that was intended to reflect on the idea that “Nothing Lasts, Nothing is Perfect, and Nothing is Finished.”  My mom and her friend proceeded to articulate a feeling I think many of us have struggled with.  Not quite “imposter syndrome” because the feeling is not limited to your job, it pervades the whole human experience. Rather, we talked about the idea that as a child, you have an impression that adults have everything figured out in life, but as you grow older, you realize that everyone is just muddling along as best they can. The most important take-away for me in listening to two late-middle-age women have this conversation was: the feeling of being unprepared never goes away, but you have to tackle life head on anyways.

When I finally finished my master’s degree, a similar feeling of ‘what do I do now?!’ caught me by surprise. I was fully cognizant of all the hard work I had done, but my mentally and emotionally exhausted brain could no longer compute how this accomplishment translated to real world skills. I could no longer see the whole of my work, I could only stress out about the bits that I felt were weak or could have been done better.  I was lost in that insidious trap of thinking that because I felt like I still had so much to learn, that my peers had their lives and their research figured out so much more effectively than my own. Time and distance, counseling, and listening to many conversations like my mom’s, helped me to break away from this trap and remember that “Nothing Lasts [Grad school took 3 years], Nothing is Perfect [My work does not need to be perfect in order to matter], and Nothing is Finished [I will never be done learning]”.

Before I moved away from the lab, I was asked to compile my institutional knowledge into a “How to” guide for new GEMM Lab members.  It really does cover a wide range of topics.  There are tips about computer log-ons, where to find certain administrative paperwork and when to fill it out, how to make a post on this blog, protocols for photo-ID work and other routine lab tasks, and even some favorite recipes for lab meetings. Setting this guide up was another helpful step on my journey to remember how much I have learned in the last 3 years, and how much I am capable of contributing to a group.

Team Ro-buff-stus in August 2017.
Team Ro-buff-stus in 2016
Our team name is derived from the scientific name of the gray whale: E. robustus, and the colorful “buff” scarves you can see us wearing on most days. 2015

I’m now actively job hunting, and while this has been stressful, it has also been strangely encouraging as I reframe the variety of skills I picked up in grad school and realize just how much is hidden in that new line on my resume. There are so many common application bullet points that I can answer with confidence. Yes! I have teaching and leadership experience because I trained and supervised 3 generations of interns in the gray whale foraging ecology project. Yes! I have data processing and analysis experience through my classwork and my successfully defended thesis.  Yes! I have scientific writing experience – one of my thesis chapters has been accepted for publication in the Journal of Wildlife Management.  With every Yes! my confidence grows, and I get more excited to start the newest chapter in my life.  I recognize that many of my applications will be rejected, because there are many other qualified applicants out there, but I will keep trying, because Nothing lasts [The job search is temporary], Nothing is Perfect [I do not need to be perfect to get the job], and Nothing is Finished [There will always be room for me to grow].

Moving Day! The GEMM Lab helps Kelly and Florence pack their house.

I am incredibly thankful to everyone who supported my journey.  My advisor Leigh, has been a fabulous mentor in the best sense of the word from day one.  My lab mates Amanda, Rachael, Dawn, Solene, Leila, Erin, Alexa, and Dom have been excellent confidantes, cheerleaders, and sources of inspiration.  My husband, Kelly made sure that I always had a cup of tea, a warm meal, and a hug to keep me going. My interns, Sarah, Cricket, Justin, Kelli, Catherine, Cathryn, Maggie, Nathan and Quince made my field work both possible and enjoyable.  My family and friends at home kept me grounded even at a distance, and my Corvallis contra dancing community reminds me to dance my cares away, because nothing lasts, nothing is perfect, and nothing is finished.

With new approaches come new insights: What we do and don’t know about blue whales

By Dawn Barlow, MSc student, Department of Fisheries and Wildlife

A few weeks ago, my labmate Dom’s blog reminded me that it is important to step back from the data and appreciate the magnificence of the animals we study from time to time. I have the privilege of studying the largest creatures on the planet. When people hear that I study blue whales, I often get a series of questions: Just how big are they, really? How many are there? Where do they migrate? Where do they breed? Despite the fact that humans hunted blue whales nearly to extinction [1,2], we still know next to nothing about these giants. The short answer to many of those questions is, “Well we don’t really know, but we’re working on it!” Which brings me back to taking time to marvel at these animals for a bit. Isn’t it remarkable that the largest animals on earth can be so mysterious?

A blue whale comes up for air in a calm sea. Photo by Leigh Torres.

Last year at this time we were aboard a research vessel in New Zealand surveying for blue whales and collecting a myriad of biological data to try and glean some insight into their lives. This winter I am processing those data and conducting a literature review to get a firm grasp on what others have found before about blue whale foraging and bioenergetics. On any given Tuesday morning Leigh and I can be found musing about the mechanics of a baleen whale jaw, about what oceanographic boundaries in the water column might be meaningful to a blue whale, about how we might quantify the energy expenditure of a foraging whale. Here are some of those musings.

Approaching a blue whale in a rigid-hull inflatable boat for data collection. UAS piloted by Todd Chandler.

Humans are, for the most part, terrestrial creatures. Even those of us that would prefer to spend most of our time near, on, or in the water are limited in what we can observe of marine life. Much of the early data that was collected on blue whales came from whaling catches. Observations of anatomy and morphology were made once the whales were killed and taken out of their marine environment. This was not long ago—Soviet whaling continued into the 1970’s in New Zealand [3]. Because baleen whales are long lived (exact age unknown for blue whales but a bowhead whale was estimated to be at least 150 years old [4]) it is entirely possible that blue whales living today remember being hunted by whalers. Observing whales in their natural state is not easy, particularly post-commercial whaling when they are few and far between.

Yet, where there is a challenge, clever people develop creative approaches and new technologies, leading to new insights. High-quality cameras have allowed scientists to photograph whales for individual identification—a valuable first step in figuring out how many there are and where they go [5]. Satellite tags have allowed scientists to track the movement of blue whales in the North Pacific and Indian Oceans, a first step in learning where these whales might go to breed. However, no blue whale breeding ground has definitively been discovered yet…

What does a whale do when it is below the surface, out of sight of our terrestrial eyes? A study from 1986 that attempted to calculate the prey demands of a whale assumed that whenever a whale was submerged, it was feeding [6]. A big assumption, but a starting place without any dive data. By 2002, tags equipped with time-depth recorders (TDR) had already revealed that blue whales make dives of variable depths and shapes [7]. But, what determines a whale’s path underwater, where they must conserve as much oxygen as they can while finding and exploiting patches of prey? The advent of digital acoustic recording tags (DTAGs) in the early 2000s have allowed scientists to measure the fine-scale movements of whales in three dimensions [8]. These tags can capture the kinematic signatures (based on pitch, roll, and yaw) of lunge-feeding events below the surface. And with the addition of echosounder technology that allows us to map the prey field, we can now link feeding events with characteristics of the prey present in the area [9]. With this progression of technology, curiosity and insight we now know that blue whales are not indiscriminate grazers, but instead pass up small patches of krill in favor of large, dense aggregations where they will get the most energetic bang for their buck.

A blue whale shows its fluke as it dives deep in an area with abundant krill deep in the water column. Photo by L. Torres.

The advent of unmanned aerial systems (UAS, a.k.a. “drones”) have provided yet another unique perspective on the lives of these whales. In 2016, our New Zealand blue whale team recorded nursing behavior between a mother and calf. In 2017, we were able to capture surface lunge feeding behavior from an aerial perspective, both for the first time.

A blue whale lunges on an aggregation of krill. UAS piloted by Todd Chandler.

Through innovative approaches, we are beginning to understand the lives of these mysterious giants. As is true for many things, the more we learn, the more questions we have. Through the GEMM Lab’s blue whale project, we have determined that a unique population of blue whales occupies the South Taranaki Bight region of New Zealand year-round; they do not simply migrate through as their current threat classification status indicates [10]. But what are their distribution patterns? Can we predict when and where whales are most likely to be in the South Taranaki Bight? Does this population have a different foraging strategy than their Californian, Chilean, or Antarctic counterparts? These are the things we are working on unraveling, and that will aid in their conservation. In the meantime, I’ll keep musing about what we don’t know, and remember to keep marveling at what we do know about the largest creatures on earth.

A blue whale mother and calf surface near Farewell Spit, New Zealand. Photo by D. Barlow.


  1. Clapham, P. J., Young, S. B. & Brownell Jr., R. L. Baleen whales: conservation issues and the status of the most endangered populations. Mamm. Rev. 29, 37–60 (1999).
  2. Branch, T. a, Matsuoka, K. & Miyashita, T. Evidence for increases in Antarctic blue whales based on baysian modelling. Mar. Mammal Sci. 20, 726–754 (2004).
  3. Branch, T. A. et al. Past and present distribution, densities and movements of blue whales Balaenoptera musculus in the Southern Hemisphere and northern Indian Ocean. Mammal Review 37, 116–175 (2007).
  4. George, J. C. et al. Age and growth estimates of bowhead whales (Balaena mysticetus) via aspartic acid racemization. Can. J. Zool. 77, 571–580 (1998).
  5. Sears, R. et al. Photographic identification of the Blue Whale (Balaenoptera musculus) in the Gulf of St. Lawrence, Canada. Report of the International Whaling Commission Special Issue 335–342 (1990).
  6. Kenney, R. D., Hyman, M. A. M., Owen, R. E., Scott, G. P. & Winn, H. E. Estimation of prey densities required by Western North Atlantic right whales. Mar. Mammal Sci. 2, 1–13 (1986).
  7. Acevedo-Gutierrez, A., Croll, D. A. & Tershy, B. R. High feeding costs limit dive time in the largest whales. J. Exp. Biol. 205, 1747–1753 (2002).
  8. Johnson, M. P. & Tyack, P. L. A digital acoustic recording tag for measuring the response of wild marine mammals to sound. IEEE J. Ocean. Eng. 28, 3–12 (2003).
  9. Hazen, E. L., Friedlaender, A. S. & Goldbogen, J. A. Blue whales (Balaenoptera musculus) optimize foraging efficiency by balancing oxygen use and energy gain as a function of prey density. Sci. Adv. 1, e1500469–e1500469 (2015).
  10. Baker, C. S. et al. Conservation status of New Zealand marine mammals, 2013. (2016).

What REALLY is a Wildlife Biologist?

By Alexa Kownacki, Ph.D. Student, OSU Department of Fisheries and Wildlife, Geospatial Ecology of Marine Megafauna Lab

The first lecture slide. Source: Lecture1_Population Dynamics_Lou Botsford

This was the very first lecture slide in my population dynamics course at UC Davis. Population dynamics was infamous in our department for being an ultimate rite of passage due to it’s notoriously challenge curriculum. So, when Professor Lou Botsford pointed to his slide, all 120 of us Wildlife, Fish, and Conservation Biology majors, didn’t know how to react. Finally, he announced, “This [pointing to the slide] is all of you”. The class laughed. Lou smirked. Lou knew.

Lou knew that there is more truth to this meme than words could express. I can’t tell you how many times friends and acquaintances have asked me if I was going to be a park ranger. Incredibly, not all—or even most—wildlife biologists are park rangers. I’m sure that at one point, my parents had hoped I’d be holding a tiger cub as part of a conservation project—that has never happened. Society may think that all wildlife biologists want to walk in the footsteps of the famous Steven Irwin and say thinks like “Crikey!”—but I can’t remember the last time I uttered that exclamation with the exception of doing a Steve Irwin impression. Hollywood may think we hug trees—and, don’t get me wrong, I love a good tie-dyed shirt—but most of us believe in the principles of conservation and wise-use A.K.A. we know that some trees must be cut down to support our needs. Helicoptering into a remote location to dart and take samples from wild bear populations…HA. Good one. I tell myself this is what I do sometimes, and then the chopper crashes and I wake up from my dream. But, actually, a scientist staring at a computer with stacks of papers spread across every surface, is me and almost every wildlife biologist that I know.

The “dry lab” on the R/V Nathaniel B. Palmer en route to Antarctica. This room full of technology is where the majority of the science takes place. Drake Passage, International Waters in August 2015. Source: Alexa Kownacki

There is an illusion that wildlife biologists are constantly in the field doing all the cool, science-y, outdoors-y things while being followed by a National Geographic photojournalist. Well, let me break it to you, we’re not. Yes, we do have some incredible opportunities. For example, I happen to know that one lab member (eh-hem, Todd), has gotten up close and personal with wild polar bear cubs in the Arctic, and that all of us have taken part in some work that is worthy of a cover image on NatGeo. We love that stuff. For many of us, it’s those few, memorable moments when we are out in the field, wearing pants that we haven’t washed in days, and we finally see our study species AND gather the necessary data, that the stars align. Those are the shining lights in a dark sea of papers, grant-writing, teaching, data management, data analysis, and coding. I’m not saying that we don’t find our desk work enjoyable; we jump for joy when our R script finally runs and we do a little dance when our paper is accepted and we definitely shed a tear of relief when funding comes through (or maybe that’s just me).

A picturesque moment of being a wildlife biologist: Alexa and her coworker, Jim, surveying migrating gray whales. Piedras Blancas Light Station, San Simeon, CA in May 2017. Source: Alexa Kownacki.

What I’m trying to get at is that we accepted our fates as the “scientists in front of computers surrounded by papers” long ago and we embrace it. It’s been almost five years since I was a senior in undergrad and saw this meme for the first time. Five years ago, I wanted to be that scientist surrounded by papers, because I knew that’s where the difference is made. Most people have heard the quote by Mahatma Gandhi, “Be the change that you wish to see in the world.” In my mind, it is that scientist combing through relevant, peer-reviewed scientific papers while writing a compelling and well-researched article, that has the potential to make positive changes. For me, that scientist at the desk is being the change that he/she wish to see in the world.

Scientists aboard the R/V Nathaniel B. Palmer using the time in between net tows to draft papers and analyze data…note the facial expressions. Antarctic Peninsula in August 2015. Source: Alexa Kownacki.

One of my favorite people to colloquially reference in the wildlife biology field is Milton Love, a research biologist at the University of California Santa Barbara, because he tells it how it is. In his oh-so-true-it-hurts website, he has a page titled, “So You Want To Be A Marine Biologist?” that highlights what he refers to as, “Three really, really bad reasons to want to be a marine biologist” and “Two really, really good reasons to want to be a marine biologist”. I HIGHLY suggest you read them verbatim on his site, whether you think you want to be a marine biologist or not because they’re downright hilarious. However, I will paraphrase if you just can’t be bothered to open up a new tab and go down a laugh-filled wormhole.

Really, Really Bad Reasons to Want to be a Marine Biologist:

  1. To talk to dolphins. Hint: They don’t want to talk to you…and you probably like your face.
  2. You like Jacques Cousteau. Hint: I like cheese…doesn’t mean I want to be cheese.
  3. Hint: Lack thereof.

Really, Really Good Reasons to Want to be a Marine Biologist:

  1. Work attire/attitude. Hint: Dress for the job you want finally translates to board shorts and tank tops.
  2. You like it. *BINGO*
Alexa with colleagues showing the “cool” part of the job is working the zooplankton net tows. This DOES have required attire: steel-toed boots, hard hat, and float coat. R/V Nathaniel B. Palmer, Antarctic Peninsula in August 2015. Source: Alexa Kownacki.

In summary, as wildlife or marine biologists we’ve taken a vow of poverty, and in doing so, we’ve committed ourselves to fulfilling lives with incredible experiences and being the change we wish to see in the world. To those of you who want to pursue a career in wildlife or marine biology—even after reading this—then do it. And to those who don’t, hopefully you have a better understanding of why wearing jeans is our version of “business formal”.

A fieldwork version of a lab meeting with Leigh Torres, Tom Calvanese (Field Station Manager), Florence Sullivan, and Leila Lemos. Port Orford, OR in August 2017. Source: Alexa Kownacki.

Skype a Scientist – Are you smarter than a middle schooler?

By Florence Sullivan, MSc

What do baby whales eat?

Does the mom whale take care of the baby whale alone?

How do whales communicate?

What are their behaviors?

These are the questions 4th grade students half a world away asked me.  They are studying biodiversity and were very curious to meet a real life scientist.  It was 2:00pm on a Tuesday here in Newport, OR, while in Australia, this classroom full of students was sitting in their 9:00am Wednesday science class.  We had an hour-long conversation about gray whale behaviors, habitat, life cycle, and general biology – all thanks to the wonders of science, technology and the computer program, Skype. The next day, I did it all again, and Skyped in to a classroom in British Columbia, to field questions about gray whales, right whales and science careers from a group of enthusiastic 5th and 6th grade students.


A class of Australian 4th graders had many imaginative questions for me through the Skype a Scientist Program.

But how in the world did I end up answering questions over Skype for a classroom full of kids in the first place? Like many good things, it began with a conversation.  During the 2016 USA election cycle, it became apparent that many people in this country distrust scientists. Sarah McAnulty, a PhD student at the University of Connecticut who studies the immune system of bob tail squid, had already been engaging in informal science communication through a profile on tumblr.  But posting things on tumblr is like preaching to the choir – your audience tends to be people who are already interested in your subject. If the problem is trying to change the public perception of scientists from aloof and insular to trustworthy and approachable, you need to start by finding people who have a lot of questions, and few pre-existing prejudices.  Who fits the bill perfectly? Kids!

After conversations with colleagues, she came up with the idea of using Skype to reach classrooms of students outside of the range where scientists usually congregate (large cities and universities).  Sarah started by connecting a handful of UConn colleagues with K-12 teachers through Facebook, but the idea quickly gained steam through mentions at a scientific conference, posts on the ‘March for Science’ Facebook group, media coverage, and word-of-mouth sharing between colleagues on both the teaching and the research side of the story.  Now, there is a full-fledged website ( where teachers and scientists can sign up to be matched based on availability, topic, and sometimes, demographic.  When pairing classrooms and scientists, Sarah makes an effort for minority students (whether this means race, gender, disability, language, or other) to see themselves represented in the scientists they get to talk to, if possible.  Representation matters –we are beyond the age of old white men in lab coats being the only ‘real scientists’ represented in media, but unfortunately, the stereotype is not dead yet! In less than a year, the program has grown to over 1900 scientists, with new fields of expertise being added frequently as people spread the word and get interested.  The program has been, and promises to continue being, an excellent resource for teachers who want to show the relevance of the subjects being discussed in their classrooms. As evidenced by the fact that I spoke with a classroom in Australia, this is a global program – check out the maps below to see where students and scientists are coming from!

This map shows the locations of all participating classrooms, current on Oct 12, 2017.
This map shows the locations of all participating scientists, current on October 22, 2017.

As for myself, I got involved because my lab mate, Alexa, mentioned how much fun she had Skyping with students.  The sign-up process was incredibly easy, and when I got matched with two classrooms, the organizers even provided a nice mad-libs style ‘fill in the blank’ introduction letter so that I didn’t waste time agonizing over how to introduce myself.

Introductory Mad-libs for scientists. Courtesy of the Skype a Scientist program.

I sent the classrooms the youtube video of my field work, and a couple of these blog posts, and waited to hear back.  I was very impressed with the 5th/6th grade class from British Columbia because the teacher actually let the students take the lead from the get-go.  One of the students replied to my email, told me what they were studying, and started the process of scheduling a meeting time that would work for both of us. When I called in, two other students took the reins, and acted as spokespeople for the rest of their classmates by repeating questions from the back of the room so that I could hear everything clearly. It was so fun to see and hear the enthusiasm of the students as they asked their questions.  Their deep curiosity and obvious excitement about the subject matter was contagious, and I found my own tone, body language, and attitude shifting to match theirs as I helped them discover the building blocks of marine ecology that I have long accepted as normal. This two way street of learning is a good reminder that we all start somewhere.

If you are interested in the program at all, I encourage you to sign up at this link: ( Who knows, engaging with kids like this just might remind you of the innocent curiosity of childhood that brought you to your scientific career in the first place.


Here are some of my favorite question that I was asked, and the responses I gave:

  • How do gray whales communicate?

With songs and underwater sounds! Check out this great website for some great examples, and prepare to be amazed! (I played the Conga and the belch-like call during the skype session, much to the amusement of the students)

  • What do baby whales eat?

Whales are mammals just like us, so believe it or not, baby whales drink their mother’s milk!

  • How long have you been a marine special ecologist for?

My favorite bit here was the mis-spelling, which made me a ‘special’ ecologist instead of a ‘spatial’ ecologist.  So I talked about how spatial ecology is a special type of ecology where we look at how big things move in the ocean!

  • My question is, can a grey whale bite people if people come close to them?
    This was a chance to show off our lab baleen samples!  I also took the time to look this up, and it turns out that bite is defined as “using teeth to cut into something” and a gray whale doesn’t have teeth!  Instead, they have baleen, which they use to sieve stuff out of the water.  So I don’t think you need to worry about getting bitten by a gray whale. That being said, it’s important not to get close to them, because they are so much bigger than us that they could hurt us on accident.


  • When you go out to see the whales, why don’t you use slightly bigger boats so you don’t flip over if the whale gets too close to you, or when you get to close to the whale?
    Our research kayak is a never-ending delight. It’s less expensive than a bigger boat, and doesn’t use fossil fuels. We want to be quiet in the water and not disturb the whale, and actively avoid getting within 100 yards so there shouldn’t be any danger. Sometimes the whales surprise us though, and we have to be careful. In this case, everyone has safety training and is able to rescue themselves if the boat should flip.

(This led to an entertaining discussion of field safety, and the appalling idea that I would make my interns jump out of the kayak into cold Pacific water on purpose during safety training)

There were many more questions, but why don’t you give the program a try, and see what kind of questions you get to answer?!

Safety First! 

A Marine Mammal Odyssey, Eh!

By Leila Lemos, PhD student

Dawn Barlow, MS student

Florence Sullivan, MS

The Society for Marine Mammalogy’s Biennial Conference on the Biology of Marine Mammals happens every two years and this year the conference took place in Halifax, Nova Scotia, Canada.

Logo of the Society for Marine Mammalogy’s 22nd Biennial Conference on the Biology of Marine Mammals, 2017: A Marine Mammal Odyssey, eh!

The conference started with a welcome reception on Sunday, October 22nd, followed by a week of plenaries, oral presentations, speed talks and posters, and two more days with different workshops to attend.

This conference is an important event for us, as marine mammalogists. This is the moment where we get to share our projects (how exciting!), get important feedback, and hear about different studies that are being conducted around the world. It is also an opportunity to network and find opportunities for collaboration with other researchers, and of course to learn from our colleagues who are presenting their work.

The GEMM Lab attending the opening plenaries of the conference!

The first day of conference started with an excellent talk from Asha de Vos, from Sri Lanka, where she discussed the need for increased diversity (in all aspects including race, gender, nationality, etc.) in our field, and advocated for the end of “parachute scientists” who come into a foreign (to them) location, complete their research, and then leave without communicating results, or empowering the local community to care or act in response to local conservation issues.  She also talked about the difficulty that researchers in developing countries face accessing research that is hidden behind journal pay walls, and encouraged everyone to get creative with communication! This means using blogs and social media, talking to science communicators and others in order to get our stories out, and no longer hiding our results behind the ivory tower of academia.  Overall, it was an inspirational way to begin the week.

On Thursday morning we heard Julie van der Hoop, who was this year’s recipient of the F.G. Wood Memorial Scholarship Award, present her work on “Drag from fishing gear entangling right whales: a major extinction risk factor”. Julie observed a decrease in lipid reserves in entangled whales and questioned if entanglements are as costly as events such as migration, pregnancy or lactation. Tags were also deployed on whales that had been disentangled from fishing gear, and researchers were able to see an increase in whale speed and dive depth.

Julie van der Hoop talks about different drag forces of fishing gears
on North Atlantic Right Whales.

There were many other interesting talks over the course of the week. Some of the talks that inspired us were:

— Stephen Trumble’s talk “Earplugs reveal a century of stress in baleen whales and the impact of industrial whaling” presented a time-series of cortisol profiles of different species of baleen whales using earplugs. The temporal data was compared to whaling data information and they were able to see a high correlation between datasets. However, during a low whaling season concurrent to the World War II in the 40’s, high cortisol levels were potentially associated to an increase in noise from ship traffic.

— Jane Khudyakov (“Elephant seal blubber transcriptome and proteome responses to single and repeated stress”) and Cory Champagne (“Metabolomic response to acute and repeated stress in the northern elephant seal”) presented different aspects of the same project. Jane looked at down/upregulation of genes (downregulation is when a cell decreases the quantity of a cellular component, such as RNA or protein, in response to an external stimulus; upregulation is the opposite: when the cell increases the quantity of cellular components) to check for stress. She was able to confirm an upregulation of genes after repeated stressor exposure. Cory checked for influences on the metabolism after administering ACTH (adrenocorticotropic hormone: a stimulating hormone that causes the release of glucocorticoid hormones by the adrenal cortex. i.e., cortisol, a stress related hormone) to elephant seals. By looking only at the stress-related hormone, he was not able to differentiate acute from chronic stress responses. However, he showed that many other metabolic processes varied according to the stress-exposure time. This included a decrease in amino acids, mobilization of lipids and upregulation of carbohydrates.

— Jouni Koskela (“Fishing restrictions is an essential protection method of the Saimaa ringed seal”) talked about the various conservation efforts being undertaken for the endangered Lake Saimaa ringed seal. Gill nets account for 90% of seal pup mortality, but if new pups can reach 20kg, only 14% of them will drown in these fishing net entanglements. Working with local industry and recreational interests, increased fishing restrictions have been enacted during the weaning season. In addition to other year-round restrictions, this has led to a small, but noticeable upward trend in pup production and population growth! A conservation success story is always gratifying to hear, and we wish these collaborative efforts continued future success.

— Charmain Hamilton (“Impacts of sea-ice declines on a pinnacle Arctic predator-prey relationship: Habitat, behaviour, and spatial overlap between coastal polar bears and ringed seals”) gave a fascinating presentation looking at how changing ice regimes in the arctic are affecting spatial habitat use patterns of polar bears. As ice decreases in the summer months, the polar bears move more, resulting in less spatial overlap with ringed seal habitat, and so the bears have turned to targeting ground nesting seabirds.  This spatio-temporal mismatch of traditional predator/prey has drastic implications for arctic food web dynamics.

— Nicholas Farmer’s presentation on a Population Consequences of Disturbance (PCoD) model for assessing theoretical impacts of seismic survey on sperm whale population health had some interesting parallels with new questions in our New Zealand blue whale project. By simulating whale movement through modeled three-dimensional sound fields, he found that the frequency of the disturbance (i.e., how many days in a row the seismic survey activity persisted) was very important in determining effects on the whales. If the seismic noise persists for many days in a row, the sperm whales may not be able to replenish their caloric reserves because of ongoing disturbance. As you can imagine, this pattern gets worse with more sequential days of disturbance.

— Jeremy Goldbogen used suction cup tags equipped with video cameras to peer into an unusual ecological niche: the boundary layer of large whales, where drag is minimized and remoras and small invertebrates compete and thrive. Who would have thought that at a marine mammal conference, a room full of people would be smiling and laughing at remoras sliding around the back of a blue whale, or barnacles filter feeding as they go for a ride with a humpback whale? Insights from animals that occupy this rare niche can inform improvements to current tag technologies.

The GEMM Lab was well represented this year with six different talks: four oral presentations and two speed talks! It is evident that all of our hard work and preparation, such as practicing our talks in front of our lab mates two weeks in advance, paid off.  All of the talks were extremely well received by the audience, and a few generated intelligent questions and discussion afterwards – exactly as we hoped.  It was certainly gratifying to see how packed the room was for Sharon’s announcement of our new method of standardizing photogrammetry from drones, and how long the people stayed to talk to Dawn after her presentation about an unique population of New Zealand blue whales – it took us over an hour to be able to take her away for food and the celebratory drinks she deserved!

GEMM Lab members on their talks. From left to right, top to bottom: Amanda Holdman, Leila Lemos, Solène Derville, Dawn Barlow, Sharon Nieukirk, and Florence Sullivan.


GEMM Lab members at the closing celebration. From left to right: Florence Sullivan, Leila Lemos, Amanda Holdman, Solène Derville, and Dawn Barlow.
We are not always serious, we can get silly sometimes!

The weekend after the conference many courageous researchers who wanted to stuff their brains with even more specialized knowledge participated in different targeted workshops. From 32 different workshops that were offered, Leila chose to participate in “Measuring hormones in marine mammals: Current methods, alternative sample matrices, and future directions” in order to learn more about the new methods, hormones and matrices that are being used by different research groups and also to make connections with other endocrinologist researchers. Solène participated in the workshop “Reproducible Research with R, Git, and GitHub” led by Robert Shick.  She learned how to better organize her research workflow and looks forward to teaching us all how to be better collaborative coders, and ensure our analysis is reproducible by others and by our future selves!

On Sunday none of us from the GEMM Lab participated in workshops and we were able to explore a little bit of the Bay of Fundy, an important area for many marine mammal species. Even though we didn’t spot any marine mammals, we enjoyed witnessing the enormous tidal exchange of the bay (the largest tides in the world), and the fall colors of the Annaoplis valley were stunning as well. Our little trip was fun and relaxing after a whole week of learning.

The beauty of the Bay of Fundy.
GEMM Lab at the Bay of Fundy; from left to right: Kelly Sullivan (Florence’s husband and a GEMM Lab fan), Florence Sullivan, Dawn Barlow, Solène Derville, and Leila Lemos.
We do love being part of the GEMM Lab!

It is amazing how refreshing it is to participate in a conference. So many ideas popping up in our heads and an increasing desire to continue doing research and work for conservation of marine mammals. Now it’s time to put all of our ideas and energy into practice back home! See you all in two years at the next conference in Barcelona!

Flying out of Halifax!