“Marching for Science” takes many forms

By Florence Sullivan, MSc student, Oregon State University.

Earth day is a worldwide event celebrated annually on April 22, and is typically observed with beach, park, or neighborhood clean ups, and outreach events sponsored by environmental groups.  Last year, environmentalists rejoiced when 195 nations signed the Paris Agreement – to “strengthen global response to the threat of climate change by keeping global temperature rise below 2 degrees C”.

GEMM Lab member Dawn Barlow helps carry the banner for the Newport, OR March for Science which over 600 people attended. photo credit: Maryann Bozza

This year, the enviro-political mood is more somber. Emotions in the GEMM Lab swing between anger and dismay to cautious optimism and hope. The anger comes from threatened budget cuts, the dismissal of climate science, and the restructuring of government agencies, while we find hope at the outpouring of support from our local communities, and the energy building behind the March for Science movement.

The Newport March for Science. photo credit: Maryann Bozza

What is perhaps most striking about the movement is how celebratory it feels. Instead of marching against something, we are marching FOR science, in all its myriad forms. With clever signs and chants like “The oceans are rising, and so are we”, “Science, not Silence”, and “We’re nerds, we’re wet, we’re really quite upset” (it rained on a lot of marches on Saturday) echoing around the globe, Saturday’s Marches for Science were a cathartic release of energy, a celebration of like-minded people.

Our competition room for NOSB 2017! Game officials are in the front of the picture, competitors at the first two desks, and parents, coaches and supporters in the back.

While millions of enthusiastic people were marching through the streets, I “Ran for Science” at the 20th annual National Ocean Science Bowl (NOSB) – delivering question sheets and scores between competitors and graders as 25 teams competed for the title of national champion! Over the course of the competition, teams of four high school students compete through rounds of buzzer-style multiple choice questions, worksheet style team challenge questions, and the Scientific Expert Briefing, a mock congressional hearing where students present science recommendations on a piece of legislation.  The challenges are unified with a yearly theme, which in 2017 was Blue Energy: powering the planet with our ocean.  Watching the students (representing 33 states!) compete is exciting and inspiring, because they obviously know the material, and are passionate about the subject matter.  Even more encouraging though, is realizing that not all of them plan to look for jobs as research scientists. Some express interest in the arts, some in policy, or teaching or engineering. This competition is not just about fostering the next generation of leading marine scientists, but rather about creating an ocean-literate, and scientifically-literate populace.  So, congratulations to Santa Monica High School, who took home the national title for the first time this year! Would you like to test your knowledge against some of the questions they faced? Try your luck here!

Santa Monica competes in the final round

The GEMM Lab also recently participated in the Hatfield Marine Science Center’s Marine Science Day.  It’s an annual open house where the community is invited to come tour labs, meet scientists, get behind the scenes, and learn about all the exciting research going on.  For us as researchers, it’s a great day to practice explaining our work and its relevance to many different groups, from school children to parents and grandparents, from artists to fishermen to teachers, fellow researchers, and many others.  This year the event attracted over 2,000 people, and the GEMM Lab was proud to be a part of this uniquely interactive day.  Outreach events like this help us feel connected to our community and the excitement present in all the questions field during this event reassure us that the public still cares about the work that we do.

Lab members Florence, Leila, and Dawn (L to R) answer questions from the public.

Our science is interdisciplinary, and we recognize the strength of multiple complimentary avenues of action to affect change.  If you are looking to get involved, consider taking a look at these groups:

500 Women Scientists: “working to promote a diverse and inclusive scientific community that brings progressive science-based solutions to local and global challenges.” Read their take on the March for Science.

314Action: starting from Pi (3.14), their mission is “to (1) strengthen communication among the STEM community, the public and our elected officials, (2) Educate and advocate for and defend the integrity of science and its use, (3) Provide a voice for the STEM community on social issues, (4) Promote the responsible use of data driven fact based approaches in public policy and (5) Increase public engagement with the STEM Community through media.”

She should run: “A movement working to create a culture that inspires women and girls to aspire towards public leadership. We believe that women of all backgrounds should have an equal shot at elected leadership and that our country will benefit from having a government with varied perspectives and experiences.” https://peoplesclimate.org/

And finally, The March for Science is finishing up it’s week of action, culminating in the People’s Climate March on April 29.

How will you carry the cause of science forward?


Celebrating Hydrothermal Vents!

By Florence Sullivan, MSc Student OSU

40 years ago, in 1977 OSU researchers led an NSF funded expedition to the Galapagos on a hunt for suspected hydrothermal vents. From the 1960s to the mid-1970s, mounting evidence such as (1) temperature anomalies found deep in the water column, (2) conduction heat flow probes at mid ocean ridges recording temperatures much lower than expected, (3) unusual mounds found on benthic mapping surveys, and (4) frequent, small, localized earthquakes at mid oceanic ridges, had the oceanographic community suspecting the existence of deep sea hydrothermal vents. However, until the 1977 cruise, no one had conclusive evidence that they existed.  During the discovery cruise at the Galapagos rift, the PI (principle investigator), Dr. Jack Corliss from OSU, used tow-yos (a technique where you drag a CTD up and down through the water in a zig zag pattern – see gif) to pinpoint the location of the hydrothermal vent plume. The team then sent the Deep Submergence Vehicle (DSV) Alvin to investigate and returned with the first photographs and samples from a hydrothermal vent. While discovery of the vent systems helped answer many questions about chemical and heat fluxes in the deep sea, it generated so many new questions that novel fields of study were created in biology, microbiology, marine chemistry, marine geology, planetary science, astrobiology and the study of the origin of life.

 “Literally every organism that came up was something that was unknown to science up until that time. It made it terribly exciting. Anything that came [up] on that basket was a new discovery,” – Dr. Richard Lutz (Rutgers University)

In celebration of this great discovery, OSU’s College of Earth, Ocean and Atmospheric Sciences sponsored a seminar looking at the past, present, and future of hydrothermal vent sciences. Dr. Robert Collier began with a timeline of how the search for hydrothermal vents began, and a commemoration of all the excellent researchers and collaborations between institutions and agencies that made the discovery possible. He acknowledged that such collaborations are often somewhat tense in terms of who gets credit for which discovery, and that while Oregon State University was the lead of the project, it takes a team to get the work done.  Dr. Jack Corliss proudly followed up with a wonderful rambling explanation of how vent systems work, and a brief dip into his ground breaking paper, “An Hypothesis concerning the relationship between submarine hot springs and the origin of life on Earth.” Published in 1981, with co-authors Dr. John Baross and Dr. Sarah Hoffman, they postulate that the temperature and chemical gradients seen at hydrothermal vents provide pathways for the synthesis of chemical compounds, formation and evolution of ‘precells’ and eventually, the evolution of free living organisms.

Dr. Corliss, Dr. Baross, and Dr. Hoffman were the first to suggest the now popular theory of the origin of life at hydrothermal vents. (click on image to read full paper)

Because of time constraints, the podium was swiftly handed over to Dr. Bill Chadwick (NOAA PMEL/ HMSC CIMRS) who brought us forward to the present day with an exciting overview of current vent research.  He began by saying “at the beginning, we thought, ‘No one has seen one of these systems before, they must be very rare…’ Now, we have found them [hydrothermal vents] in every ocean basin – including the arctic and southern oceans. We just needed to know how to look!”  Dr. Chadwick also reminded us that even 40 years later, new discoveries are still being made. For example, on his most recent cruise aboard the R/V Falkor in December 2016, they found a sulfur chimney that was alternately releasing bubbles of gas (sulfur, CO2 or other, hard to know without sampling) or bubbles of liquid sulfur! Check out the video below:

Some of the goals for this recent cruise included mapping new areas of the Mariana back-arc, and investigating differences in the biological communities between vents in the Mariana trench region (a subduction zone) and vents in the back arc (a spreading zone) to see if geology plays a role in biological community composition.  For some very cool video footage of the expedition and the various dives performed by the brand new ROV SUBastian (because all scientists love puns), check out the Schmidt Ocean Institute youtube channel.

Dr. Chadwick showed this video to highlight results from his last cruise.

Finally, Dr. Andrew Thurber wrapped up the session with some thoughts about hydrothermal vents from the perspective of an ecosystem services model. Even after 40 years of research, there are still many unknowns about these ecosystems.  Individual vent systems are inherently unique due to their deep sea isolation. However, most explored sites have revealed metals and mineral deposits that have generated a lot of interest from commercial sea floor mining companies. Exploitation of these deposits would be an example of ecosystem “provisioning services” (products that are obtained from the ecosystem). Other examples include the biology of the vents as a source of new genetic material, and the thermal and chemical gradients as natural laboratories that could lead to breakthroughs in pharmaceutical research. Cultural services are those non-material benefits that people obtain from an ecosystem. At hydrothermal vents these include new scientific discoveries, educational uses (British children’s television show “The Octonauts,” has several episodes featuring hydrothermal vent creatures), and creative inspiration for artists and others. Dr. Thurber cautions that there are ethical questions to be answered before considering exploitation of these resources, but there is a lot of potential for commercial and non-commercial use of vent ecosystems.

Vent inspired art by Lily Simonson

As an undergraduate at the University of Washington, I spent time as a research assistant in Dr. John Baross’ astrobiology lab. We studied evolutionary pathways of hydrothermal vent viruses and bacteria to inform the search for life on exoplanets such as Jupiter’s moon Europa.  It was very fun and exciting for me to attend this seminar, hear stories from pioneers in the field, and remember the systems I worked on in undergrad.  I may have moved up the food chain a little now, but as we all work on our pieces of the puzzle, it is important for scientists to remember the interdisciplinary nature of our work, and how there is always something more to learn.



“Evolution”: a board game review

By Florence Sullivan MSc student, Department of Fish and Wildlife.

Another grad student once told me that in order to survive grad school, I would need three things:

(1) an exercise routine, (2) a pet, and (3) a hobby. My Pilates class on Wednesdays is a great mid-week reminder to stretch. I don’t have a pet, so that advice gets fulfilled vicariously through friends. As for my hobby, I think you’ll find that even when scientists take a break from work, we really don’t get that far away from the subject matter…..

Board games have evolved significantly since the early ‘90s when I grew up on such family staples as Monopoly, Risk, Sorry!, Candyland, and Chutes and Ladders, etc. Now, table-top games tend to fall into three loose categories – “Euro-games” that focus on strategy and economic themes as well as keeping all players in the game until the end, “American-style” that tend toward luck and direct player contact so that not everyone plays until the end, and “Party” that are easy to learn and are often played in large groups as social icebreakers or to provide entertainment.

A few of my favorite games.

As board games proliferate, we see the use of many themes and often, there are valuable educational lessons included in the game design!  There are militaristic or survival games (Betrayal at the House on the Hill, Dead of Winter), economic and engineering (Settlers of Catan, Istanbul, Ticket to ride, Carcassonne), fantasy and art (Small World, Dixit), cooperative vs competitive (Hanabi, Forbidden Desert vs. 7 Wonders), and some of my favorites – the sciences (Compounded, Bioviva, Pandemic).

Today, let’s talk about my current favorite – Evolution. It is immediately obvious that the game designers responsible are either giant nerds (I use this in the most loving way possible) or have spent some quality time with ecologists.  Not only is the art work beautiful, and the game play smooth, but the underlying mechanics allow serious ecological theories such as ‘predator and prey mediated population cycles’, ‘co-evolution’ and ‘evolutionary arms-races’ to be acted out and easily understood.

Players set up their species around the watering hole, and contemplate their next moves.
Players set up their species (1 green/yellow tile = 1 species) around the watering hole, and contemplate their next moves.

In game play, as in life, the point of the game is to eat – victory is achieved by the player who has managed to ‘digest’ the most food tokens. All players begin with a single species, and with each turn, can either add traits (ie. fat tissue, scavenger, etc.) to the species, increase the body size of a species, gain a population level, or gain additional species.  Next, players take food from a limited, random supply until there is no food left. Species that have not been fed to their full capacity (population levels) will starve, and can even become extinct – much like the reality of environmental cycles.  Finally, all food that has been ‘eaten’ is digested, and the next round begins.

Since a player can never be sure how much food will appear on the watering hole each turn, it is a good strategy to capitalize on traits like foraging which allows a species to take twice as much food every time it feeds.  If your species cooperates with another, that means that it gets to eat every time you feed the first species. A player who combines foraging traits with multiple cooperating species in a “cooperation chain” can quickly empty the watering hole before any other players get a chance.  Much like a species perfectly adapted to its niche in the real world will out compete more generalist species.

The pack-hunting carnivore on the left can easily take down the fertile defensive herding species in the upper right. The efficient foraging species in the middle is protected by its horns, and cooperates with the next species to the right. The burrowing species is protected from carnivores only as long as it is full (and presumably no longer needs to venture out of its burrow).

One way to avoid the competition for food at the watering hole is to play the carnivore trait.  This species must now consume other species in order to feed itself.  A few caveats; a carnivore must be larger in body size than anything it tries to eat, and can no longer eat plant food as it is an obligate carnivore. As soon as a carnivore appears on the board, the evolutionary arms-race begins in earnest!  Traits such as burrowing, climbing, hard shells, horns, defensive herding and warning calls become vital to survival.  But carnivores can be clever, and apply ambush to species with warning call, or pack-hunting to a species with defensive herding.  In everything, there is a certain balance, and quickly, players will find themselves acting out a classic ‘boom and bust population growth cycle’ scenario, where herbivores go extinct due to low food supply at the watering hole and/or high predation pressure, and carnivores soon follow when there are no un-protected species for them to feed upon.

A flying creature must first pay the ‘upkeep cost’ of its body size in food, before it can feed its population. Good thing it has the extra cliff-side food source that is only accessible to other species with wings!

An expansion has been released for the game – it is called Flight – and introduces traits such as flight, camouflage, good eyesight, and others.  From an ecologist’s perspective, it fits the original game well both scientifically and thematically.  To achieve flight, a higher price must be paid (in terms of cards discarded) to gain the trait card, and unlike other species, an ‘upkeep cost’ must be gathered in food tokens before the species actually eats any food tokens during the round.  However, flight also gives access to a cliff-side watering hole that is not accessible to earthbound species. This neatly mirrors the real world where flight is an energetically costly activity that also opens new niches.

The next expansion is just arriving in stores, and I can’t wait to play it! It’s called Climate, and adds traits such as nocturnal, claws, and insectivore. Perhaps more exciting though, are the ‘event cards’ which will trigger things like desertification, cold snaps, heatwaves, volcanic eruptions and meteor strikes. A climate tracker will keep track of whether the planet is in an ice age or a warming period, and certain traits will make your species more or less likely to survive – can you guess which ones might be useful in either scenario? I think it will be enormously fun to play through different climate scenarios and see how traits stack and species interactions evolve.  Perhaps this new addition to the game will even cause a new game review in Nature – check out their initial assessment here: http://www.nature.com/nature/journal/v528/n7581/full/528192a.html

Games like evolution are useful thought exercises for students and researchers because they promote discussion of adaptive traits, predator-prey cycles, climate, and ecosystem dynamics as related to our own projects. Watching a story unfold in front of you is a great way to truly understand some of the core principles of ecology (and other subjects). This is especially relevant in the GEMM lab where we continuously ask ourselves why our study species act the way they do? How do they find prey, and how are/will they adapt(ing) to our changing climate?

Oceanus Day Three: Dolphin Delights

by Florence Sullivan, MSc student

Our third day aboard the Oceanus began in the misty morning fog before the sun even rose. We took the first CTD cast of the day at 0630am because the physical properties of the water column do not change much with the arrival of daylight. Our ability to visually detect marine mammals, however, is vastly improved with a little sunlight, and we wanted to make the best use of our hours at sea possible.

Randall Munroe www.XKCD.com

Our focus on day three was the Astoria canyon – a submarine feature just off the Oregon and Washington coast. Our first oceanographic station was 40 miles offshore, and 1300 meters deep, while the second was 20 miles offshore and only 170 meters deep.  See the handy infographic below to get a perspective on what those depths mean in the grand scheme of things.  From an oceanographic perspective, the neatest finding of the day was our ability to detect the freshwater plume coming from the Columbia River at both those stations despite their distance from each other, and from shore! Water density is one of the key characteristics that oceanographers use to track parcels of water as they travel through the ocean conveyor belt. Certain bodies of water (like the Mediterranean Sea, or the Atlantic or Pacific Oceans) have distinct properties that allow us to recognize them easily. In this case, it was very exciting to “sea” the two-layer system we had gotten used to observing overlain with a freshwater lens of much lower salinity, higher temperature, and lower density. This combination of freshwater, saltwater, and intriguing bathymetric features can lead to interesting foraging opportunities for marine megafauna – so, what did we find out there?

Click through link for better resolution: Randall Munroe www.XKCD.com/1040/large

Morning conditions were almost perfect for marine mammal observations – glassy calm with low swell, good, high, cloud cover to minimize glare and allow us to catch the barest hint of a blow….. it should come as no surprise then, that the first sightings of the day were seabirds and tuna!

I didn't catch any photos of the Tuna, so here's some mola mola we spotted. photo credit: Florence Sullivan
I didn’t catch any photos of the tuna, so here’s some sunfish we spotted. photo credit: Florence Sullivan

One of the best things about being at sea is the ability to look out at the horizon and have nothing but water staring back at you. It really drives home all the old seafaring superstitions about sailing off the edge of the world.  This close to shore, and in such productive waters, it is rare to find yourself truly alone, so when we spot a fishing trawler, there’s already a space to note it in the data log.  Ships at sea often have “follower” birds – avians attracted by easy meals as food scraps are dumped overboard. Fishing boats usually attract a lot of birds as fish bycatch and processing leftovers are flushed from the deck.  The birders groan, because identification and counts of individuals get more and more complicated as we approach other vessels.  The most thrilling bird sighting of the day for me were the flocks of a couple hundred fork-tailed storm petrels.

Fork-tailed storm petrels
Fork-tailed storm petrels. photo credit: Florence Sullivan

I find it remarkable that such small birds are capable of spending 80% of their life on the open ocean, returning to land only to mate and raise a chick. Their nesting strategy is pretty fascinating too – in bad foraging years, the chick is capable of surviving for several days without food by going into a state of torpor. (This slows metabolism and reduces growth until an adult returns.)

Just because the bird observers were starting to feel slightly overwhelmed, doesn’t mean that the marine mammal observers stopped their own survey.  The effort soon paid off with shouts of “Wait! What are those splashes over there?!” That’s the signal for everyone to get their binoculars up, start counting individuals, and making note of identifying features like color, shape of dorsal fin, and swimming style so that we can make an accurate species ID. The first sighting, though common in the area, was a new species for me – Pacific white sided dolphins!

Pacific white sided dolphin
A Pacific white sided dolphin leaps into view. photo credit: Florence Sullivan. Taken under NMFS permit 16111 John Calambokidis

A pod of thirty or so came to ride our bow wake for a bit, which was a real treat. But wait, it got better! Shortly afterward, we spotted more activity off the starboard bow.  It was confusing at first because we could clearly see a lot of splashes indicating many individuals, but no one had glimpsed any fins to help us figure out the species. As the pod got closer, Leigh shouted “Lissodelphis! They’re lissodelphis!”  We couldn’t see any dorsal fins, because northern right whale dolphins haven’t got one! Then the fly bridge became absolute madness as we all attempted to count how many individuals were in the pod, as well as take pictures for photo ID. It got even more complicated when some more pacific white sided dolphins showed up to join in the bow-riding fun.

Northern right whale dolphins are hard to spot! photo credit: Florence Sullivan Taken under NMFS permit 16111 John Calambokidis
Northern right whale dolphins are hard to spot! photo credit: Florence Sullivan Taken under NMFS permit 16111 John Calambokidis

All told, our best estimates counted about 200 individuals around us in that moment. The dolphins tired of us soon, and things continued to calm down as we moved further away from the fishing vessels.  We had a final encounter with an enthusiastic young humpback who was breaching and tail-slapping all over the place before ending our survey and heading towards Astoria to make our dock time.

Humpback whale breach
Humpback whale breach. photo credit: Florence Sullivan. Taken under NMFS permit 16111 John Calambokidis

As a Washington native who has always been interested in a maritime career, I grew up on stories of The Graveyard of the Pacific, and how difficult the crossing of the Columbia River Bar can be. Many harbors have dedicated captains to guide large ships into the port docks.  Did you know the same is true of the Columbia River Bar?  Conditions change so rapidly here, the shifting sands of the river mouth make it necessary for large ships to receive a local guest pilot (often via helicopter) to guide them across.  The National Motor Lifeboat School trains its students at the mouth of the river because it provides some of “the harshest maritime weather conditions in the world”.  Suffice it to say, not only was I thrilled to be able to detect the Columbia River plume in our CTD profile, I was also supremely excited to finally sail across the bar.  While a tiny part of me had hoped for a slightly more arduous crossing (to live up to all the stories you know), I am happy to report that we had glorious, calm, sunny conditions, which allowed us all to thoroughly enjoy the view from the fly bridge.

Cape Disappointment Lighthouse at the Columbia River Bar.
Cape Disappointment Lighthouse at the Columbia River Bar.

Finally, we arrived in Astoria, loaded all our gear into the ship’s RHIB (Ridged Hulled Inflatable Boat), lowered it into the river, descended the rope ladder, got settled, and motored into port. We waved goodbye to the R/V Oceanus, and hope to conduct another STEM cruise aboard her again soon.

Now if the ground would stop rolling, that would be just swell.

Last but not least, here are the videos we promised you in Oceanus Day Two – the first video shows the humpback lunge feeding behavior, while the second shows tail slapping. Follow our youtube channel for more cool videos!


Oceanus Day Two: All the Albatrosses

By Amanda Holdman and Florence Sullivan

Today got off to a bright and early start. As soon as daylight permitted, we had spotters out on duty looking for more marine mammals. We began to survey at the north end of Heceta bank, where we again encountered many humpback whales lunge feeding. We broke transect, and got some great video footage of a pair them – so check our youtube channel next week – we’ll upload the video as soon as we get back to better internet (dial up takes some getting used to again – the whales don’t know about highspeed yet).

Humpbacks lunge feeding at surface. photo credit: Leigh Torres. Taken under NMFS permit 16111 John Calambokidis.
Humpbacks lunge feeding at surface. photo credit: Leigh Torres. Taken under NMFS permit 16111 John Calambokidis.

After working with the humpbacks to capture photo-id data for about an hour, we turned south, and ran parallel to Heceta bank until we reached the southern edge. Along the way, we counted 30 humpbacks, and many California gulls, marbled murrelets, pink footed shearwaters, and sooty shearwaters.

After lunch, we conducted a CTD cast to see how conditions might be different between the southern and northern edges of the bank. Surface temperatures increased from 12.09C to 13.2C while bottom temperatures decreased from 8.7C to 7.8C.  The northern station was a textbook perfect two layer system. It had a well mixed surface layer with a steep pycnocline separating it from the colder, saltier, denser, bottom layer. The southern station still had two layers, but the pycnocline (the depth where a rapid change in density occurs, which delineates the edges of water masses) was not as steep. We are interested in these discreet measurements of ocean conditions because areas of high primary productivity (the green chlorophyll-a line) are often re-occurring hot spots of food for many levels of the food chain. Since we can’t phone the whales and ask them where to meet up, we use clues like these to anticipate the best place to start looking.

Readout of the CTD cast. The left plot has temperature in blue, and salinity in green. The right plot has density in black, chlorophyll-a in green, and oxygen in blue. observe how different variables change with depth!
Readout of the CTD cast. The left plot has temperature in blue, and salinity in green. The right plot has density in black, chlorophyll-a in green, and oxygen in blue. observe how different variables change with depth (on the y-axes)!

We next turned west to transect the continental shelf break. Here, we were hoping to observe changes in species composition as waters got deeper, and habitat changed.  The shelf break is often known as an area of upwelling and increased primary productivity, which can lead to concentrations of marine predators taking advantage of aggregations of prey. As we moved further offshore, everyone was hoping for some sperm whales, or maybe some oceanic dolphin species, and if we’re really lucky, maybe a beaked whale or two.

Black footed Albatross with immature gulls. photo credit: Leigh Torres
Black footed Albatross with immature gulls. photo credit: Leigh Torres

Today our students learned the lesson of how difficult marine mammal observation can be when our target species spend the majority of their lives underwater – where we can’t see them. While there were a couple of hours of mammal empty water in there, observers were kept busy identifying long tailed- jaegers, cassin’s auklets, murrelets, petrels, shearwaters, fulmars, and so many black-footed albatrosses, that they almost became “normal”.  That being said, we did spot a fin whale, a few groups of Dall’s porpoise, and three pacific-white-sided dolphins.  Unexpectedly, we also saw an unidentified shark, and several sunfish (mola mola)!

Humpback whale profile. photo credit: Amanda Holdman. Taken under NMFS permit 16111 John Calambokidis.
Humpback whale profile – notice the hump before the dorsal fin. photo credit: Amanda Holdman. Taken under NMFS permit 16111 John Calambokidis.
Fin Whale profile. photo credit: Amanda Holdman. Taken under NMFS permit 16111 John Calambokidis.
Fin Whale profile – notice how long the back is before the fin, and how pointed the dorsal fin is compared to the humpback. photo credit: Amanda Holdman. Taken under NMFS permit 16111 John Calambokidis.

Last but not least, we engaged in a long standing oceanographic tradition, which is to draw on Styrofoam cups, and send them down to Davy Jone’s Locker attached to the CTD.  When you bring them back up, the pressure has caused them to shrink to a fraction of their original size, which is an excellent demonstration of the crushing power of pressure (and why its harder to build a submarine than a rocket).

Shrunken cups! The first row have been sent down to 1400m, while the back row are still full size!
Shrunken cups! The first row have been sent down to 1400m, while the back row are still full size!

Now, we are steaming north toward Astoria Canyon, where we hope to make some more sightings in the morning. Stand by for news from our final day at sea.

Fin Whale. photo credit Amanda Holdman. Taken under NMFS permit 16111 John Calambokidis.
Fin Whale. photo credit Amanda Holdman. Taken under NMFS permit 16111 John Calambokidis.
Dahl's Porpoise. photo credit: Florence Sullivan. Taken under NMFS permit 16111 John Calambokidis.
Dahl’s Porpoise. photo credit: Florence Sullivan. Taken under NMFS permit 16111 John Calambokidis.

R/V Oceanus Day One: Hungry Hungry Humpbacks

By Florence Sullivan and Amanda Holdman

The GEMM lab is adventuring out into the wild blue yonder of open ocean sampling and educational outreach! Leigh is the chief scientist onboard the R/V Oceanus for the next two days as we sail through Oregon waters in search of marine megafauna. Also onboard are four local teachers and five high school students who are learning the tricks of the trade. Amanda and I are here to help teach basic oceanography and distance sampling techniques to our enthusiastic students.

Science Party musters in the dry lab for safety debrief. photo credit: Florence Sullivan
Science Party musters in the dry lab for safety debrief. photo credit: Florence Sullivan

We started the morning with safety briefings, and headed out through the Newport breakwater, direction: Stonewall Bank.  Stonewall is a local bathymetric feature where upwelling often occurs, leading to a productive ecosystem for both predators and prey. Even though our main sampling effort will be offshore this trip, we didn’t even make out of the harbor before recording our first gray whale and California sea lion sightings.

California Sea Lions on the Newport buoy. Taken under NMFS permit 16111 John Calambokidis
California Sea Lions on the Newport buoy. Taken under NMFS permit 16111 John Calambokidis

Our students (and their teachers) are eager and quick to catch on as we teach them new methodologies. Amanda and I had prepared presentations about basic oceanographic and distance sampling methods, but really the best way to learn is to jump in and go. We’ve set up a rotation schedule, and everyone is taking turns scanning the ocean for critters, deploying and recovering the CTD, logging data, and catching plankton.

a small pod of Orca. Photo credit: Florence Sullivan. Taken under NMFS permit 16111 John Calambokidis
A small pod of Orca. Photo credit: Florence Sullivan. Taken under NMFS permit 16111 John Calambokidis

So far, we have spotted gray whales, sea lions, a pod of (lightning speed) killer whales, lots of seagulls, northern fulmars, sooty shearwaters, storm petrels, and cormorants, but today’s highlight has to the last sighting of ~42 humpback whales. We found them at the Northern edge of Heceta Bank – a large rocky reef which provides structural habitat for a wide variety of marine species. As we approached the area, we spotted one whale, and then another. At first, our spotters had no trouble inputting the data, getting photo-ID shots, and distinguishing one whale from the next, but as we continued, we were soon overwhelmed. With whale blows surrounding us on all sides, it was hard to know where to look first – here a surface lunge, there, a breach, a spout, a fluke, a flipper slap! The surface activity was so dense and enthralling, it took a few moments before realizing there were some sea lions in the feeding frenzy too!

Five humpback whales surface at once. photo credit: Leigh Torres. Taken under NMFS permit 16111 John Calambokidis
Five humpback whales surface at once. photo credit: Leigh Torres. Taken under NMFS permit 16111 John Calambokidis

We observed the group, and tried to document as many individuals as possible as the sunset faded into night. When poor visibility put a stop to the visuals, we hurried to do a plankton tow and CTD cast to find some environmental insights for such a gathering. The CTD revealed a stratified water column, with two distinct layers, and the plankton tow brought up lots of diatoms and krill. As one of the goals of this cruise is to explore how marine mammals vary with ocean gradients, this is a pretty cool way to start.

A humpback whale lunge feeds. Photo credit: Leigh Torres. Taken under NMFS permit 16111 John Calambokidis
A humpback whale lunge feeds. Photo credit: Leigh Torres. Taken under NMFS permit 16111 John Calambokidis

A long day observing has left us all exhausted, but not too tired to share our excitement. Stay tuned for more updates from the briny blue!

Follow this link for real time view of our beautiful ship! : http://webcam.oregonstate.edu/oceanus

Humpback flukes for photo ID. photo credit: Leigh Torres. Taken under NMFS permit 16111 John Calambokidis
Humpback flukes for photo ID. photo credit: Leigh Torres. Taken under NMFS permit 16111 John Calambokidis

Cetaceans in the news

By Florence Sullivan, MSc Student Oregon State University, Department of Fisheries and Wildlife

It’s been a couple long, busy weeks here at the GEMM lab as my field season has wrapped up and new labmates are just getting started. There are students in the lab at all hours organizing, processing, and analyzing data. Much of our work investigating the spatial and temporal patterns of marine mammals around the globe takes long hours of parsing through information to bring you results. Systematic sampling is an important research tool but, sometimes, exciting discoveries just wash up at your front door.

Humpback Whale stranding in Puget Sound


Just recently on August 7, 2016, a 39 foot, juvenile female Humpback whale stranded at the Fauntleroy Ferry Terminal in West Seattle, WA. This is very close to my home town, and a recent GEMM lab intern was in the area at the time, so we have a photo of this event for you!  The humpback came ashore while still alive, but despite efforts to keep it comfortable and wet, the whale died before the tide returned.

Humpback whale stranded at Fauntleroy Ferry Terminal, West Seattle. photo credit: Sarah Wiesner
Humpback whale stranded at Fauntleroy Ferry Terminal, West Seattle. photo credit: Sarah Wiesner

A cursory necropsy, conducted on site by researchers from NOAA fisheries and the Cascadia Research Collective, showed the animal had multiple internal parasites and injuries associated with beaching, as well as being in poor nutritional condition overall. There were also bites on the lower jaw consistent with killer whale encounters, and a pod of orca had been spotted in the area the previous day. Necropsies are an important source of data about the basic physiology and biology of marine mammals that is not accessible through any other means. The carcass was towed to a deep-water disposal site approved by federal and state agencies and sunk.  Humpback whale sightings in the Salish Sea have increased in the last five years. This, together with the fact that this juvenile was in poor nutritional condition, could indicate that there is competition for resources.

New Species Discovered!

There have been two new species of cetaceans discovered in recent months!



The first exciting announcement was published in the journal Marine Mammal Science in July. Japanese fishermen in the North Pacific have long reported a small, black beaked whale they call karasu, “raven.” In 2013, Japanese researchers published a paper about this black, beaked whale variant of the sub-family Berardiinae using three stranded carcasses, but the sample size was too small to make any conclusions. Three years later there is strong genetic evidence that this is a new species of beaked whale based on (1) genetic analysis of samples from a stranded animal on St. George, Alaska (2) skeletons in a high school in Unalaska, Alaska, (3) skeletons in the Smithsonian archives, and (4) skeletons in other museum and institutional collections around the Pacific Rim. The species still needs to be described and named, but some researchers have suggested Berardius beringiae to honor the sea where it was found. What do you think?

This beaked whale stranded in the Aleutian Islands in 2004, and was measured by Reid Brewer of the University of Alaska Southeast.  Analysis of tissue samples later identified the whale as one of the new species. Photo Credit: Don Graves


The second announcement of a new species came from the Smithsonian Institution earlier this month. A skull of the newly-named Arktocara yakataga species was found more than 60 years ago near the present day city of Yakutat, Alaska. Obviously belonging to a prehistoric dolphin, the skull was kept at the Smithsonian’s National Museum of Natural History until new research found that it was actually a previously undiscovered species. A. yakatoga is thought to be a relative of the present day South Asian River Dolphin, and is both the northernmost, and one of the oldest dolphin fossils found to date. This new find is a reminder to everyone that not all discoveries are made in the field. Museum and archival collections continue to play an important role in the advancement of science and knowledge. Check out the link above to see some awesome artistic renderings of the new species, as well as a 3D scan of the skull in question.

Humpbacks vs Orcas



Sounds like the next big B-Sci-fi movie doesn’t it? Well, this story is the latest to go viral on the internet. Published on July 20, 216 in the journal Marine Mammal Science, the study investigated accounts of humpback whales interfering with killer whale attacks. Researchers looked at 115 interactions between the two species. Humpbacks initiated 57% of the interactions, and 87% of these moments occurred when the killer whales were attacking or feeding on prey.  Surprisingly, only 11% of the prey in these events were humpback whales, while the remaining 89% ranged from other cetaceans to pinnipeds, to a sunfish! The authors suggest that the humpback whales were alerted to attacking killer whales in the area by vocalizations, and that this attracts them to the scene regardless of the species being attacked. Although kin selection (care for or defense of relatives to preserve your family’s genetics even though the action may be detrimental to self), or reciprocity (exchange between individuals for mutual benefit) might explain some of this behavior, the fact that humpback whales so often defended other species means that we cannot rule out the possibility of altruistic behavior.  This is a pretty fascinating read, and definitely opens up some new questions for researchers!

Humpback whales.
Humpback whales. Photo credit: Florence Sullivan

Making a Splash

By: Cathryn Wood, Lawrence University ’17, summer REU in the GEMM Lab

Greetings from Port Orford! My name is Cathryn, and I am the fourth member of the GEMM Lab’s gray whale foraging ecology research team, which includes Florence, Kelli, and the other Catherine (don’t worry, I go by Cat). Nearly 5 weeks into field season, I am still completely amazed with my first West Coast experience and doing what I’ve always dreamt of: studying marine mammals. Coming from Michigan’s Upper Peninsula, this may seem slightly out of place, but my mom can attest; she read “Baby Beluga” to me every night when I was a toddler. Now a rising senior majoring in biology at Lawrence University, I’ve been focusing my coursework on aquatic and marine ecology to prepare for graduate school where I plan to specialize in marine science. Being part of this research is a very significant step for me into the field.

So how did I end up here, as part of this amazing project and dream, women-in-science team? I am interning through OSU’s Ocean Sciences REU program at the Hatfield Marine Science Center, where the GEMM Lab is located. REU stands for “Research Experience for Undergraduates ”, and is an NSF-funded research internship program found in numerous universities around the country. These internships allow undergrads to conduct independent research projects under the guidance of a faculty mentor at the program’s institution. I applied to several REUs this past winter, and was one of 12 undergrads accepted for the program at HMSC. Each of us is paired with different faculty members to work on various projects that cover a diverse range of topics in the marine sciences; everything from estuarine ecology, to bioacoustics. I was ecstatic to learn that I had been paired with Dr. Torres as my faculty mentor to work on Florence’s gray whale project, which had been my first choice during the application process.

My particular research this summer is going to complement Florence’s master’s thesis work by asking new questions regarding the foraging data. While her project focuses on the behavioral states of foraging whales, I will be looking at the whale tracks to see if there are patterns in their foraging behavior found at the individual level. Traditionally, ecological studies have accepted classical niche theory, treating all individuals within a population as ecological equivalents with the same niche width. Any variances present among individuals are often disregarded as having an insignificant consequence on the population dynamics as a whole, but this simplification can overlook the true complexity of that population . The presence of niche variation among conspecifics is known to occur in at least 93 species across a diverse array of taxa, so the concept of individual specialization, and how it can affect ecological processes is gaining recognition progressively in the field (Bolnick et al., 2003). My goal is to determine whether or not the gray whales in this study, and presumably others in the Pacific Coast Feeding Group (PCFG), exhibit individual specialization in their foraging strategies . There are many ways in which individuals can specialize in foraging, but I will be specifically determining if fine scale spatial patterns in the location of foraging bouts exists, regardless of time.

To address my question, I am using the whale tracking data from both 2015 and 2016, and learning to use some very important software in the spatial ecology world along the way through a method that Dr. Torres introduced to me. Starting in ArcGIS, I generate a kernel density layer of a raw track (Fig. 1 ), which describes the relative distribution of where the tracked whale spent time (Fig. 2 ). Next, using the isopleth function in the software Geospatial Modelling Environment, I generate a 50% density contour line that distinguishes where the whale spent at least 50% of its time during the track (Fig. 3 ). Under the assumption that foraging took place in these high density areas, we use these 50% contour lines to describe foraging bout locations. I now go back to ArcGIS to make centroids within each 50% line, which mark the exact foraging bout locations (Fig. 4 ).

Fig.1 Raw individual whale track.
Fig. 1 Raw individual whale track.
Fig. 2 Kernel Density map of whale track.
Fig. 2 Kernel Density map of whale track.
Fig. 3 50% isopleth contours of locations with highest foraging densities
Fig. 3 50% isopleth contours of locations with highest foraging densities
Fig. 4 Final centroids to signify foraging bouts
Fig. 4 Final centroids to signify foraging bouts

These centroids will be determined for every track by an individual whale, and then compared relative to foraging locations of all tracked whales to determine if the individual is foraging in different locations than the population. Then, the tracks of individuals who repeatedly visit the site at least three times will be compared with one another to determine if the repeat whales show spatial and/or temporal patterns in their foraging bout locations, and if specialization at a fine scale is occurring in this population. If you did not quite follow all those methods, no worries, it was a lot for me to take in at first too. I’ve finally gotten the hang of it though, and am grateful to now have these skills going into grad school.

Because I am interested in behavioral ecology and the concept of individuality in animal populations, I am extremely excited to see how this research plays out. Results could be very eye-opening into the fine scale foraging specialization of the PCFG sub-population because they already demonstrate diet specialization on mysid (as opposed to their counterparts in the Bering Sea who feed on benthic organisms) and large scale individual residency patterns along the Pacific Northwest (Newell, 2009; Calambokidis et al., 2012). Most significantly, understanding how individuals vary in their feeding strategies could have very important implications for future conservation measures for the whales, especially during this crucial foraging season where they replenish their energy reserves.  Management efforts geared for an “average population” of gray whales could ultimately be ineffective if in fact individuals vary from one another in their foraging strategies. Taking into account the ways in which variation occurs amongst individuals is therefore crucial knowledge for successful conservation approaches.

My project is unique from those of the other REUs because I am simultaneously in the midst of assisting in field season number two of Florence’s project. While most of the other interns are back at Hatfield spending their days in the lab and doing data analyses like a 9-5 job, I am with the team down in Port Orford for field season. This means we’re out doing research every dawn as weather allows. Though I may never have an early bird bone in my body, the sleepy mornings are totally worth it because ecology field work is my favorite part of research. To read more about our methods in the field, check out Florence’s post.

Since Catherine’s last update, we’ve had an eventful week. To our dismay, Downrigger Debacle 2.0 occurred. (To read about the first one, see Kelli’s post). This time it was not the line – our new line has been great. It was a little wire that connected the downrigger line to the pipe that the GoPro and TDR are connected to. It somehow snapped due to what I presume was stress from the currents.   Again, it was Catherine and I in the kayak, with a very successful morning on the water coming to a close when it happened. Again, I was in the bow, and she was in the stern deploying the equipment – very déjà vu. When she reeled in an equipment-less line, we at first didn’t know how to break it to Florence and Kelli who were up on the cliff that day. Eventually, Catherine radioed “Brace yourselves…” and we told them the bad news. Once again, they both were very level-headed, methodical, and un-blaming in the moments to follow. We put together the same rescue dive team as last time, and less than a week later, they set off on the mission using the GPS coordinates I had marked while in the kayak. Apparently, between the dredging taking place in the harbor and the phytoplankton bloom, visibility was only about 2 feet during the dive, but they still recovered the equipment, with nothing but baked goods and profuse thanks as payment. We are very grateful for another successful recovery, and are confident that our new attachment mechanism for the downrigger will not require a third rescue mission (Fig. 6-8). Losing the equipment twice now has taught us some very important things about field work. For one, no matter how sound you assume your equipment to be, it is necessary to inspect it for weak points frequently – especially when salt water and currents are in the picture. Perhaps even more importantly, we’ve gotten to practice our problem solving skills and see firsthand how necessary it is to act efficiently and calmly when something goes wrong. In ecological field research you have to be prepared for  anything.

Fig. 5 Original setup of GoPro and TDR.
Fig. 5 Original setup of GoPro and TDR.
Fig. 6 Photo taken after the wire that connected the pole to the downrigger line snapped.
Fig. 6 Photo taken after the wire that connected the pole to the downrigger line snapped.
Fig. 7 New mechanism for attaching the pole to the downrigger line.
Fig. 7 New mechanism for attaching the pole to the downrigger line.
Fig. 8 Equipment rescue team: Aaron Galloway and Taylor Eaton diving, Greg Ryder operating the boat, and Florence on board to direct the GPS location of where the equipment was lost.
Fig. 8 Equipment rescue team: Aaron Galloway and Taylor Eaton diving, Greg Ryder operating the boat, and Florence on board to direct the GPS location of where the equipment was lost.

In other news, unlike our slow-whale days during the first two weeks of the project, we have recently had whales to track nearly every day from the cliff! In fact, the same, small, most likely juvenile, whale pictured in Catherine’s last post has returned several times, and we’ve nicknamed her “Buttons” due to two distinguishing white spots on her tail peduncle near the fluke. Though we tend to refer to Buttons as “her”, we cannot actually tell what the sex is definitively…until now. Remember in Catherine’s post when she described how Buttons defecated a lot, and how our team if, given the opportunity, is supposed to collect the feces when we’re out in the kayak for Leila’s project?  Everything from hormone levels to reproductive status to, yes, sex, is held in that poop! Well, Miss (or Mr.) Buttons was in Tichenor Cove today, and to our delight, she performed well in the defecation department once again. Florence and I were on cliff duty tracking her and Kelli and Catherine were in Tichenor on the kayak when we first noticed the defecation.  I then radioed down to the kayak team to stop what they were doing and paddle quickly to go collect it before it sank (Fig. 9).  Even in these situations, it is important to stay beyond 100 yards of the animal, as required by the MMPA. Florence and I cheered them on and our ladies did indeed get the poop sample, without disturbing the whale (Fig. 10). It was a sight to behold.

Fig. 9 Kelli and Catherine on a mission.
Fig. 9 Kelli and Catherine on a mission.
Fig. 10 Kelli and Catherine collecting the feces.
Fig. 10 Kelli and Catherine collecting the feces.

We were able to track Buttons for the remainder of our time on the cliff, and were extremely content with the day’s work as we packed all the gear up later in the afternoon. Right before we were about to leave, however, Buttons had one more big treat for us. As we looked to the harbor before starting the trek back to the truck, we paused briefly after noticing a large, white splash in the middle of the harbor, not far from the dock. We paused for a second and thought “No, it can’t be, was that —?” and then we see it again and unanimously yelled “BREACH!” Buttons breached about five times on her way back to Tichenor Cove from where she had been foraging in Mill Rocks. It is rare to see a gray whale breach, so this was really special. Florence managed to capture one of the breaches on video:

At first I thought a big ole humpback had arrived, but nope, it was our Buttons! I am in awe of this little whale, and am forever-grateful to be in the presence of these kinds of moments. She’s definitely made her splash here in Port Orford. I think our team has started to as well.


Bolnick, D. I., Svanback, R., Fordyce, J. A., Yang, L. H., Davis, J. M., Hulsey, C. D., & Forrister, M. L. (2003). Ecology of Individuals: Incidence and Implications of Individual Specialization. The American Naturalist, 161(1), 28.

Calambokidis, J., Laake, J. L., & Klimek, A. (2012). Updated analysis of abundance and population structure of seasonal gray whales in the Pacific Northwest, 1998-2010 (Vol. 2010).

Newell, C. (2009). Ecological Interrelationships Between Summer Resident Gray Whales (Eschrichtius robustus) and Their Prey, Mysid Shrimp (Holmesimysis sculpta and Neomysis rayi) along the Central Oregon Coast.








Dredging and low visibility doesn’t stop us! We paddle on.

By: Catherine Lo, Research Intern, Oregon State University ‘16

Hello everyone! My name is Catherine Lo and I am a recent graduate from Oregon State University with a Bachelor’s of Science in Biology with a focus in Marine Biology. It has been an incredible whirlwind leading up to this point: long nights studying for finals, completing my degree, and planning the next steps for my future. I am fortunate to be working as a summer research intern for the GEMM Lab under the supervision of Dr. Leigh Torres and Msc. student Florence Sullivan in their research on the foraging ecology of gray whales. I have dreamed of working with marine mammals, potentially as a research veterinarian and so, capturing this position has been a great opportunity to begin my career.

The days go slow, but the weeks go fast. It’s already week 4 of our field season and the team and I are definitely in the groove of our research. The alarm(s) goes off at 5:00 AM…okay maybe closer to 5:30 AM (oops!), getting dressed for either the kayak or cliff based work, scarfing down breakfast that is usually a diet consisting of toast and peanut butter, and then heading off to the beach to launch the kayak. But this week it was different. A dredging event in Port Orford coordinated by the US Army Corps of Engineers is now taking place right next to the port’s jetty near our study site (Figure 1). This is an important process to move the sediment built up during the year in order for ships to safely navigate in and out of the port. We knew this was going to happen at some point over the summer, and worried that it might impact our research methods and objectives, but at the same time it offers some new opportunities: the chance to see how our GoPro and mysid sampling methods in Tichenor Cove are impacted by the sediment flow from the dredging activities.

Figure 1. View of the dredger from the cliff field site in Port Orford.

My teammate Kelli and I were stationed on the cliff during the first deposit of sediment after the dredge’s first night and morning’s worth of scooping sand. None of us knew where the actual deposit site would be so we kept a good eye on it. The ship headed past the jetty. Turned around and, as a concerned feeling mustered within our field team, it began lowering the platform holding the sand just 250 yards away from our primary study site in Tichenor Cove! At this point, we knew things were going to be different in our samples. Unfortunately along with the sediment stirring up from dredging, we think a phytoplankton bloom is occurring simultaneously. Our GoPro footage lately has been rather clouded making it difficult to identify any mysid relative to our past footage. You can compare Figure 2 to the GoPro image found in Figure 2 of a previous post. It is times like these that we learn how dynamic the ocean is, how human activity can alter the ocean ecosystem, and how to adapt to changes, whether these adaptations are within our reach or not. We are interested to see how our sample sites will change again over time as the dredging operation finishes and the phytoplankton bloom ends.

Figure 2. This GoPro image taken in Tichenor Cove illustrates exactly how murky our view of the water column is with the sediment dredging operation in close proximity.
Figure 2. This GoPro image taken in Tichenor Cove illustrates exactly how murky our view of the water column is with the sediment dredging operation in close proximity.

Aside from the current water clarity situation, we’ve also had some exciting moments! Given how few whales we’ve seen thus far and how the ones we have tracked are predominately hanging by Mill Rocks, which is ~1km east of Tichenor Cove, Dr. Leigh Torres—our head advisor—thought it would be a good idea to check out the mysid scene over there to see what the attraction was. So, we sent our kayak team over there to conduct a few GoPro drops and zooplankton net tows and figure out what is so enticing for the whales.

While conducting this sampling work at Mill Rocks, I and my teammate were lucky enough to encounter a gray whale foraging. And believe me, we were going “off-the-walls” as soon as we heard from the cliff team and saw a blow as the whale surfaced nearby. It was one of those “best time of my life” moments where my dreams of kayaking this close to a whale came true. We fumbled around for our waterproof camera to get clear shots of its lateral flanks for photo identification while also trying to contain our excitement to a more decent level, and at the same time we had to make sure we were not in the whale’s path. There it was; surface after surface, we admired the immense size and beauty of a wild animal before our eyes. The worst part of it was when our camera battery died not long after taking a few pictures, but in a way it gave us a chance to really appreciate the existence of these animals. Note to self during research: always check your batteries are fully charged before heading out!

It baffles me how so often people walk along beaches or drive by without knowing an animal as incredible as this whale is just outside of the shoreline. Every time I’m inside pulling out time stamps or doing photo identification, I always think, “I wonder if there’s a whale in Tichenor Cove or at Mill Rocks right now…Yeah, there probably is one”. Alas, the data management work needs to be done and there’s always the next day for an opportunity of a sighting.

For a few days, our kayak team wasn’t able to work due to a small craft advisory. If you’ve ever been to Port Orford, you’d understand the severity of how windy it gets here. Ranging between 15 knots to 25 knots as early as 7am, so it gets rather difficult to maintain position at each of our sampling stations in our kayak. Fortunately our cliff team was able to set out. We were lucky to see a small whale foraging inside Tichenor Cove and later move onto Mill Rocks. This little one was giving us quite a show! Almost every time it came to the surface, defecation was observed shortly after. As unpleasant as feces might be, it can actually provide an abundance of information about a specific whale including sex, reproductive status, hormone levels, and much more. While doing our research, we are always keeping an eye out for signs of defecation in order to collect samples for another lab member’s PhD work. Here you can check out more information about Leila’s research. Figure 3 depicts a great image of defecation captured by our cliff team.

Figure 3. Gray whale defecating as it dives into the water in Tichenor Cove.
Figure 3. Gray whale defecating as it dives into the water in Tichenor Cove.
Figure 4. Gray whale swimming in Tichenor Cove taken by fellow intern Cathryn Wood.
Figure 4. Gray whale swimming in Tichenor Cove taken by fellow intern Cathryn Wood.

In addition to helping out Leila’s work, we recently began a collaboration with Aaron Galloway from The Oregon Institute of Marine Biology (OIMB). Aaron and his post-doc are looking at the fatty acid composition of mysid as an approach to eventually infer the diet of an aquatic animal. Check out his website which is linked to his name to learn more about the basis of his approach! While we collect mysid samples for them, in return they give us substantial information about the energy content of the mysid. This information on the energetic content of mysid will help the GEMM Lab answer questions about how much mysid gray whales need to eat.

Oregon State University and University of Oregon have a long-standing, intense rivalry. However, as an Alumna from Oregon State, I am amazed and thrilled to see how these two institutions can come together and collaborate. I mean, we’re all here for the same thing. Science, right? It creates the opportunity to apply integrative research by taking advantage of various expertise and resources. If we have those chances to reach out to others, why not make the most of it? In the end, sound science is what really matters, not rooting for the ducks or beavers.

My marine science background is based on my experiences looking at tidepools and hopping around on rocks to understand how vast intertidal communities range from invertebrates to algae. These experiences were an incredible part of my life, but now I look at the ocean unsure of what animals or environmental situations I might encounter. That’s what makes it so attractive. Don’t get me wrong. The intertidal will always hold a special place in my heart, but the endless possibilities of being a part of this marine mammal research team is priceless. I have learned so much about myself including my strengths and weaknesses. Living in Port Orford, which is a small coastal town with just a little over 1,000 people gives you a new perspective. The community has been very welcoming and I have appreciated how so much interest is placed on the kind of work we do. As I eat my nightly bowl of ice cream, I think about how, from here on out, the good and the bad can only bring a lifetime of skills and memories.

Figure 5. Me being extremely happy to be out on the kayak on a beautiful morning.
Figure 5. Me being extremely happy to be out on the kayak on a beautiful morning.







The Gray [Whale]s are back in town – Field season 2016 is getting started!

By Florence Sullivan – MSc Student, GEMM Lab

Hello Everyone, and welcome back for season two of our ever-expanding research project(s) about the gray whales of the Oregon coast!

Overall, our goal is document and describe the foraging behavior and ecology of the Pacific Coast Feeding Group of Gray Whales on the Oregon Coast. For a quick recap on the details of this project read these previous posts:

During this summer season, the newest iteration of team ro”buff”stus will be heading back down to Port Orford, Oregon to try to better understand the relationship between gray whales and their mysid prey. Half the team will once again use the theodolite from the top of Graveyard Point to track gray whales foraging in Tichenor Cove, the Port of Port Orford, and the kelp beds near Mill Rocks.  Meanwhile, the other half of the team will use the R/V Robustus (i.e. a tandem ocean kayak named after our study species – Eschrichtius robustus, the gray whale) to repeatedly deploy a GoPro camera at several sampling locations in Tichenor cove. We hope that by filming vertical profiles of the water column, we will be able to create an index of abundance for the mysid to describe their temporal and spatial distribution of their swarms.  We’re particularly interested in the differences between mysid swarm density before and after a whale forages in an area, and how whale behaviors might change based on the relative density of the available prey.

The GEMM lab's new research vessel being launched on her maiden voyage.
Ready to take the R/V Robustus out for her maiden voyage in Port Orford to test some of our new equipment. photo credit: Leigh Torres

In theory, asking these questions seems simple – get in the boat, drop the camera, compare images to the whale tracklines, get an answer!  In reality, this is not the case. A lot of preparatory work has been going on behind the scenes over the last six months. First, we had to decide what kind of camera to use, and decide what sort of weighted frame to build to get it to sink straight to the bottom. Then came the questions of deployment by hand versus using a downrigger,

Example A why it is a bad idea to try to sample during a diatom bloom.
Example A why it is a bad idea to try to sample during a diatom bloom – You can’t see anything but green.

what settings to use on the camera, how fast to send it down and bring it back up, what lens filters are needed (magenta) and other logistical concerns. (Huge thank you to our friends at ODFW Marine Reserves Program for the help and advice they provided on many of these subjects.) We spent some time in late May testing our deployment system, and quickly discovered that sampling during a diatom bloom is completely pointless because visibility is close to nil.

However, this week, we were able to test the camera in non-bloom conditions, and it works!  We were able to capture images of a few small mysid swarms very near the bottom of the water column, and we didn’t need external lights to do it. We were worried that adding extra lights would artificially attract mysid to the camera, and bias our measurements, as well as potentially disturbing the whale’s foraging behavior. (Its also a relief because diving lights are expensive, and would have been one more logistical thing that could go wrong. General advice: Always follow the KISS method when designing a project – keep it simple, ——!)


This image is taken at a depth of ~10 meters, with no color corrective filter on the lens
This image is taken at a depth of ~10 meters, with no color corrective filter on the lens – notice how blurry the mysid are.
This is empty water, in the mid water column
This is empty water, in the mid water column
More Mysid! This time with a Magenta filter on the lens to correct the colors for us.
Much clearer Mysid! This time with a magenta filter on the lens to correct the colors for us.

My advisor recently introduced me to the concept of the “7 Ps”; Proper Prior Planning Prevents Piss Poor Performance.  To our knowledge, we are the first group to try to use GoPro cameras to study the spatial and temporal patterns of zooplankton aggregations. With new technology comes new opportunities, but we have to be systematic and creative in how we use them. Trial and error is an integral part of developing new methods – to find the best technique, and so that our work can be replicated by others. Now that we know the GoPro/Kayak set-up is capable of capturing useable imagery, we need to develop a protocol for how to process and quantify the images, but that’s a work in progress and can wait for another blog post.   Proper planning also includes checking last year’s equipment to make sure everything is running smoothly, installing needed computer programs on the new field laptop, editing sampling protocols to reflect things that worked well last year, and expanding the troubleshooting appendixes so that we have a quick reference guide for when things go wrong in the field.  I am sure that we will run into more weird problems like last year’s “Chinese land whale”, but I also know that we would have many more difficulties if we had not been planning this field effort for the last several months.

Planning our sampling pattern in Tichenor Cove
Planning our sampling pattern in Tichenor Cove.

Team Ro”buff”stus is from all over the place this year – we will have members from Oregon, North Carolina and Michigan – and we are all meeting for the first time this week.  The next two weeks are going to be a whirlwind of introductions, team bonding, and learning how to communicate effectively while using the theodolite, our various computer programs, GoPro, Kayak, and more!  We will keep the blog updated with our progress, and each team member will post at least once over the course of the summer. Wish us luck as we watch for whales, and feel free to join in the fun on pretty much any cliff-side in Oregon (as long as you’ve got a kelp bed nearby, chances are you’ll see them!)